Sparganium stoloniferum (sparganium_stoloniferum)
Imported from atlas release summary for Sparganium stoloniferum.
980
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
980
Candidate Genes
BAHD
7.18%
C3'H/CYP98A
6.05%
POD
5.97%
C4H
5.84%
4CL
4.38%
T3O
3.8%
IFS
3.46%
CYP76
3.38%
Other Families
59.95%
More Families (96)
UGT
73
3.05%
UFGT
68
2.84%
7DLGT
66
2.75%
DWF4/CYP90B1
58
2.42%
F3H
54
2.25%
NMT
53
2.21%
F3'H/CYP75B
46
1.92%
HCT
42
1.75%
BR6OX2/CYP85A2
41
1.71%
STR
37
1.54%
RAS
37
1.54%
PMT
36
1.5%
SMT1/SMT2/SMT3
36
1.5%
CYP71
35
1.46%
CAD
34
1.42%
LAC
31
1.29%
PYKS
29
1.21%
CODM/T6ODM
28
1.17%
CSE
28
1.17%
H6H
25
1.04%
IFR
25
1.04%
T16H
24
1.0%
CYP90D1
23
0.96%
GS
21
0.88%
FNS
20
0.83%
TRI/TRII
19
0.79%
CAS
19
0.79%
ANR
17
0.71%
CCR
16
0.67%
G8O/G8H
15
0.63%
PAL
15
0.63%
COR
14
0.58%
NCS
14
0.58%
SGD
14
0.58%
LAMT
12
0.5%
GES
12
0.5%
F3'5'H/CYP75A
12
0.5%
TPS
12
0.5%
SLS
11
0.46%
8HGO
11
0.46%
CPD/CYP90A1
10
0.42%
BR6OX1/CYP85A1
10
0.42%
IO
9
0.38%
DFR
9
0.38%
COMT
9
0.38%
CYP51G1
9
0.38%
TAT
8
0.33%
ROT3/CYP90C1
8
0.33%
MVK
8
0.33%
BBE
7
0.29%
CNMT
7
0.29%
CCoAOMT
7
0.29%
16OMT
6
0.25%
TDC
6
0.25%
MPO
6
0.25%
TYDC_DDC
6
0.25%
7DLH
6
0.25%
ANS/LDOX
6
0.25%
CHI
6
0.25%
DET2
6
0.25%
AACT
6
0.25%
CHS
5
0.21%
CPR
5
0.21%
HPPR
5
0.21%
SMO1/SMO2
5
0.21%
SQS/FDFT1
5
0.21%
GGPPS
5
0.21%
CYP719
4
0.17%
CYP80B1
4
0.17%
F5H/CYP84A
4
0.17%
FPPS
4
0.17%
XMT_MXMT_DXMT
3
0.13%
ADC
3
0.13%
DWF7
3
0.13%
HYD1
3
0.13%
HMGR
3
0.13%
PMK
3
0.13%
IDI
3
0.13%
MVD
3
0.13%
HMGS
3
0.13%
DXS
3
0.13%
6OMT_4OMT_SOMT
2
0.08%
ISY
2
0.08%
FLS
2
0.08%
DWF1
2
0.08%
DWF5
2
0.08%
HDS/IspG
2
0.08%
CMK/IspE
2
0.08%
MCT/IspD
2
0.08%
CYP80F1
1
0.04%
FK
1
0.04%
CPI1
1
0.04%
SQE
1
0.04%
HDR/IspH
1
0.04%
DXR
1
0.04%
MDS/IspF
1
0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 271 | 19 | BAHD (133) | View species results |
| Phenylpropanoid pathway | 251 | 11 | POD (130) | View species results |
| Alkaloid pathway | 198 | 20 | NMT (29) | View species results |
| Flavonoid pathway | 113 | 9 | UFGT (62) | View species results |
| Rosmarinic acid pathway | 90 | 7 | C4H (32) | View species results |
| Steroid pathway | 57 | 12 | SMT1/SMT2/SMT3 (21) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 870 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 251 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| sparganium_stoloniferum_evm.model.Chr1.2504 | Rosmarinic Acid | 4CL | low | borderline |
| sparganium_stoloniferum_evm.model.Chr1.2781 | Rosmarinic Acid | 4CL | medium | pass |
| sparganium_stoloniferum_evm.model.Chr1.961 | Rosmarinic Acid | 4CL | medium | pass |
| sparganium_stoloniferum_evm.model.Chr10.1116 | Rosmarinic Acid | 4CL | low | borderline |
| sparganium_stoloniferum_evm.model.Chr10.1482 | Rosmarinic Acid | 4CL | medium | pass |
| sparganium_stoloniferum_evm.model.Chr11.11 | Rosmarinic Acid | 4CL | low | borderline |
| sparganium_stoloniferum_evm.model.Chr11.1294 | Rosmarinic Acid | 4CL | medium | pass |
| sparganium_stoloniferum_evm.model.Chr11.1830 | Rosmarinic Acid | 4CL | medium | pass |
| sparganium_stoloniferum_evm.model.Chr11.1868 | Rosmarinic Acid | 4CL | low | borderline |
| sparganium_stoloniferum_evm.model.Chr11.56 | Rosmarinic Acid | 4CL | low | borderline |
| sparganium_stoloniferum_evm.model.Chr11.832 | Rosmarinic Acid | 4CL | medium | pass |
| sparganium_stoloniferum_evm.model.Chr12.1081 | Rosmarinic Acid | 4CL | medium | pass |
| sparganium_stoloniferum_evm.model.Chr12.8.2 | Rosmarinic Acid | 4CL | low | borderline |
| sparganium_stoloniferum_evm.model.Chr14.1205 | Rosmarinic Acid | 4CL | medium | pass |
| sparganium_stoloniferum_evm.model.Chr15.1049 | Rosmarinic Acid | 4CL | medium | pass |
| sparganium_stoloniferum_evm.model.Chr15.1151 | Rosmarinic Acid | 4CL | medium | pass |
| sparganium_stoloniferum_evm.model.Chr15.919 | Rosmarinic Acid | 4CL | medium | pass |
| sparganium_stoloniferum_evm.model.Chr15.967 | Rosmarinic Acid | 4CL | medium | pass |
| sparganium_stoloniferum_evm.model.Chr15.969 | Rosmarinic Acid | 4CL | medium | pass |
| sparganium_stoloniferum_evm.model.Chr2.391 | Rosmarinic Acid | 4CL | medium | pass |
| sparganium_stoloniferum_evm.model.Chr2.80 | Rosmarinic Acid | 4CL | medium | pass |
| sparganium_stoloniferum_evm.model.Chr3.279 | Rosmarinic Acid | 4CL | low | borderline |
| sparganium_stoloniferum_evm.model.Chr3.755 | Rosmarinic Acid | 4CL | low | borderline |
| sparganium_stoloniferum_evm.model.Chr4.134 | Rosmarinic Acid | 4CL | medium | pass |
| sparganium_stoloniferum_evm.model.Chr4.135 | Rosmarinic Acid | 4CL | medium | pass |
| sparganium_stoloniferum_evm.model.Chr4.136 | Rosmarinic Acid | 4CL | medium | pass |
| sparganium_stoloniferum_evm.model.Chr4.159 | Rosmarinic Acid | 4CL | medium | pass |
| sparganium_stoloniferum_evm.model.Chr4.1960 | Rosmarinic Acid | 4CL | low | borderline |
| sparganium_stoloniferum_evm.model.Chr4.2303 | Rosmarinic Acid | 4CL | low | borderline |
| sparganium_stoloniferum_evm.model.Chr5.168 | Rosmarinic Acid | 4CL | low | borderline |
| sparganium_stoloniferum_evm.model.Chr6.1211 | Rosmarinic Acid | 4CL | medium | pass |
| sparganium_stoloniferum_evm.model.Chr7.1532 | Rosmarinic Acid | 4CL | low | borderline |
| sparganium_stoloniferum_evm.model.Chr8.345 | Rosmarinic Acid | 4CL | medium | pass |
| sparganium_stoloniferum_evm.model.Chr8.346 | Rosmarinic Acid | 4CL | medium | pass |
| sparganium_stoloniferum_evm.model.Chr9.25 | Rosmarinic Acid | 4CL | medium | pass |
| sparganium_stoloniferum_evm.model.Chr1.1135 | Rosmarinic Acid | C4H | low | borderline |
| sparganium_stoloniferum_evm.model.Chr1.124 | Rosmarinic Acid | C4H | low | borderline |
| sparganium_stoloniferum_evm.model.Chr1.1630 | Rosmarinic Acid | C4H | medium | pass |
| sparganium_stoloniferum_evm.model.Chr1.170 | Rosmarinic Acid | C4H | low | borderline |
| sparganium_stoloniferum_evm.model.Chr1.1953 | Rosmarinic Acid | C4H | low | borderline |
| sparganium_stoloniferum_evm.model.Chr1.2148 | Rosmarinic Acid | C4H | low | borderline |
| sparganium_stoloniferum_evm.model.Chr1.224 | Rosmarinic Acid | C4H | medium | pass |
| sparganium_stoloniferum_evm.model.Chr1.2492 | Rosmarinic Acid | C4H | low | borderline |
| sparganium_stoloniferum_evm.model.Chr1.2859 | Rosmarinic Acid | C4H | medium | pass |
| sparganium_stoloniferum_evm.model.Chr1.2860 | Rosmarinic Acid | C4H | medium | pass |
| sparganium_stoloniferum_evm.model.Chr1.3290 | Rosmarinic Acid | C4H | low | borderline |
| sparganium_stoloniferum_evm.model.Chr1.462 | Rosmarinic Acid | C4H | low | borderline |
| sparganium_stoloniferum_evm.model.Chr1.549 | Rosmarinic Acid | C4H | low | borderline |
| sparganium_stoloniferum_evm.model.Chr1.733 | Rosmarinic Acid | C4H | low | borderline |
| sparganium_stoloniferum_evm.model.Chr1.824 | Rosmarinic Acid | C4H | low | borderline |