PlantSME Plant secondary metabolism enzyme database

Thlaspi arvense (thlaspi_arvense)

Imported from atlas release summary for Thlaspi arvense.

1442
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (94)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 435 19 BAHD (194) View species results
Alkaloid pathway 328 19 NMT (64) View species results
Phenylpropanoid pathway 304 11 POD (129) View species results
Flavonoid pathway 166 9 UFGT (104) View species results
Rosmarinic acid pathway 109 7 C4H (41) View species results
Steroid pathway 100 11 SMT1/SMT2/SMT3 (40) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1429 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 266 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CAD
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Gene Pathway Family Confidence Status
TarvThla_scaffold100011010.1 Phenylpropanoid CAD low borderline
TarvThla_scaffold100011010.2 Phenylpropanoid CAD low borderline
TarvThla_scaffold100011010.3 Phenylpropanoid CAD low borderline
TarvThla_scaffold110018720.1 Phenylpropanoid CAD medium borderline
TarvThla_scaffold140059600.1 Phenylpropanoid CAD medium borderline
TarvThla_scaffold140061780.1 Phenylpropanoid CAD medium pass
TarvThla_scaffold150077970.1 Phenylpropanoid CAD low borderline
TarvThla_scaffold190118960.1 Phenylpropanoid CAD low borderline
TarvThla_scaffold190118970.1 Phenylpropanoid CAD low borderline
TarvThla_scaffold230163950.1 Phenylpropanoid CAD low borderline
TarvThla_scaffold230166390.1 Phenylpropanoid CAD low borderline
TarvThla_scaffold2380171990.1 Phenylpropanoid CAD low borderline
TarvThla_scaffold240173990.1 Phenylpropanoid CAD medium pass
TarvThla_scaffold270188270.1 Phenylpropanoid CAD low borderline
TarvThla_scaffold2910199070.1 Phenylpropanoid CAD low borderline
TarvThla_scaffold2910199080.1 Phenylpropanoid CAD low borderline
TarvThla_scaffold310213280.1 Phenylpropanoid CAD medium pass
TarvThla_scaffold40250250.1 Phenylpropanoid CAD low borderline
TarvThla_scaffold50281090.1 Phenylpropanoid CAD medium pass
TarvThla_scaffold50282040.1 Phenylpropanoid CAD medium pass
TarvThla_scaffold50282050.1 Phenylpropanoid CAD medium pass
TarvThla_scaffold50282060.1 Phenylpropanoid CAD medium pass
TarvThla_scaffold50282070.1 Phenylpropanoid CAD medium pass
TarvThla_scaffold50282080.1 Phenylpropanoid CAD medium pass
TarvThla_scaffold50286080.1 Phenylpropanoid CAD medium pass
TarvThla_scaffold520296470.1 Phenylpropanoid CAD low borderline
TarvThla_scaffold560305450.1 Phenylpropanoid CAD low borderline
TarvThla_scaffold560306390.1 Phenylpropanoid CAD medium borderline
TarvThla_scaffold590310920.1 Phenylpropanoid CAD low borderline
TarvThla_scaffold60317950.1 Phenylpropanoid CAD medium borderline
TarvThla_scaffold60317960.1 Phenylpropanoid CAD medium borderline
TarvThla_scaffold70342220.1 Phenylpropanoid CAD medium borderline
TarvThla_scaffold710345910.1 Phenylpropanoid CAD low borderline
TarvThla_scaffold80354260.1 Phenylpropanoid CAD low borderline
TarvThla_scaffold80356550.1 Phenylpropanoid CAD low borderline
TarvThla_scaffold80357390.1 Phenylpropanoid CAD low borderline
TarvThla_scaffold970385170.1 Phenylpropanoid CAD low borderline