PlantSME Plant secondary metabolism enzyme database

Thlaspi arvense (thlaspi_arvense)

Imported from atlas release summary for Thlaspi arvense.

1442
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (94)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 435 19 BAHD (194) View species results
Alkaloid pathway 328 19 NMT (64) View species results
Phenylpropanoid pathway 304 11 POD (129) View species results
Flavonoid pathway 166 9 UFGT (104) View species results
Rosmarinic acid pathway 109 7 C4H (41) View species results
Steroid pathway 100 11 SMT1/SMT2/SMT3 (40) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1429 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 266 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: LAC
Reset
Gene Pathway Family Confidence Status Best Target
TarvThla_scaffold110020310.1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
TarvThla_scaffold110021740.1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
TarvThla_scaffold130045620.1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
TarvThla_scaffold140063130.1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
TarvThla_scaffold1460073220.1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
TarvThla_scaffold1580083790.1 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
TarvThla_scaffold170100090.1 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
TarvThla_scaffold180107760.1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
TarvThla_scaffold260182420.1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
TarvThla_scaffold260182420.2 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
TarvThla_scaffold260184230.1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
TarvThla_scaffold290198720.1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
TarvThla_scaffold310209890.1 Phenylpropanoid LAC low borderline LAC__00001__sp_O80434_LAC4_ARATH
TarvThla_scaffold390243620.1 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
TarvThla_scaffold40246990.1 Phenylpropanoid LAC low borderline LAC__00004__sp_Q9LFD2_LAC8_ARATH
TarvThla_scaffold70340570.1 Phenylpropanoid LAC low borderline LAC__00004__sp_Q9LFD2_LAC8_ARATH
TarvThla_scaffold70340580.1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
TarvThla_scaffold890368540.1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
TarvThla_scaffold890368660.1 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
TarvThla_scaffold890368670.1 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
TarvThla_scaffold890369940.1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
TarvThla_scaffold90376440.1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH