Thlaspi arvense (thlaspi_arvense)
Imported from atlas release summary for Thlaspi arvense.
1442
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1442
Candidate Genes
BAHD
6.37%
C4H
6.2%
C3'H/CYP98A
5.92%
CYP76
4.28%
4CL
3.97%
POD
3.72%
IFS
3.69%
UGT
3.24%
Other Families
62.6%
More Families (94)
T3O
114
3.21%
7DLGT
111
3.13%
UFGT
110
3.1%
NMT
97
2.73%
DWF4/CYP90B1
96
2.71%
F3H
90
2.54%
F3'H/CYP75B
77
2.17%
SGD
66
1.86%
BR6OX2/CYP85A2
64
1.8%
STR
60
1.69%
CODM/T6ODM
58
1.63%
SMT1/SMT2/SMT3
58
1.63%
CYP71
58
1.63%
ROT3/CYP90C1
53
1.49%
CSE
51
1.44%
TRI/TRII
50
1.41%
CAS
44
1.24%
T16H
43
1.21%
H6H
39
1.1%
IFR
38
1.07%
CAD
37
1.04%
BBE
30
0.85%
PYKS
30
0.85%
16OMT
29
0.82%
LAMT
28
0.79%
F5H/CYP84A
28
0.79%
CYP90D1
28
0.79%
G8O/G8H
26
0.73%
COMT
26
0.73%
FNS
25
0.7%
SLS
24
0.68%
GES
23
0.65%
TAT
23
0.65%
TPS
23
0.65%
LAC
22
0.62%
GS
21
0.59%
ANR
21
0.59%
CCR
21
0.59%
HCT
20
0.56%
RAS
20
0.56%
IO
17
0.48%
CPD/CYP90A1
17
0.48%
BR6OX1/CYP85A1
17
0.48%
PAL
15
0.42%
CNMT
14
0.39%
F3'5'H/CYP75A
14
0.39%
7DLH
12
0.34%
GGPPS
12
0.34%
COR
11
0.31%
8HGO
11
0.31%
ANS/LDOX
11
0.31%
SQE
11
0.31%
CYP51G1
11
0.31%
PMT
10
0.28%
MPO
9
0.25%
FPPS
9
0.25%
NCS
8
0.23%
CHS
8
0.23%
SQS/FDFT1
8
0.23%
AACT
8
0.23%
CYP80B1
7
0.2%
CCoAOMT
7
0.2%
CYP719
6
0.17%
CPR
6
0.17%
SMO1/SMO2
6
0.17%
DFR
5
0.14%
CHI
5
0.14%
CYP80F1
4
0.11%
DWF7
4
0.11%
DET2
4
0.11%
MVK
4
0.11%
MVD
4
0.11%
DXS
4
0.11%
TYDC_DDC
3
0.08%
HPPR
3
0.08%
MCT/IspD
3
0.08%
IDI
3
0.08%
XMT_MXMT_DXMT
2
0.06%
TDC
2
0.06%
ISY
2
0.06%
FK
2
0.06%
DWF1
2
0.06%
CMK/IspE
2
0.06%
MDS/IspF
2
0.06%
HDS/IspG
2
0.06%
PMK
2
0.06%
HDR/IspH
2
0.06%
HMGR
2
0.06%
ADC
1
0.03%
CPI1
1
0.03%
DWF5
1
0.03%
HYD1
1
0.03%
HMGS
1
0.03%
DXR
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 435 | 19 | BAHD (194) | View species results |
| Alkaloid pathway | 328 | 19 | NMT (64) | View species results |
| Phenylpropanoid pathway | 304 | 11 | POD (129) | View species results |
| Flavonoid pathway | 166 | 9 | UFGT (104) | View species results |
| Rosmarinic acid pathway | 109 | 7 | C4H (41) | View species results |
| Steroid pathway | 100 | 11 | SMT1/SMT2/SMT3 (40) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1429 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 266 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PYKS
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| TarvThla_scaffold110018200.1 | Alkaloid | PYKS | low | borderline |
| TarvThla_scaffold110022470.1 | Alkaloid | PYKS | low | borderline |
| TarvThla_scaffold1300052040.1 | Alkaloid | PYKS | low | borderline |
| TarvThla_scaffold130039890.1 | Alkaloid | PYKS | high | pass |
| TarvThla_scaffold130048850.1 | Alkaloid | PYKS | high | pass |
| TarvThla_scaffold1580084780.1 | Alkaloid | PYKS | low | borderline |
| TarvThla_scaffold160086560.1 | Alkaloid | PYKS | low | borderline |
| TarvThla_scaffold1720102260.1 | Alkaloid | PYKS | low | borderline |
| TarvThla_scaffold180105480.1 | Alkaloid | PYKS | low | borderline |
| TarvThla_scaffold2000135100.1 | Alkaloid | PYKS | low | borderline |
| TarvThla_scaffold20129510.1 | Alkaloid | PYKS | low | borderline |
| TarvThla_scaffold210150610.1 | Alkaloid | PYKS | low | borderline |
| TarvThla_scaffold310214920.1 | Alkaloid | PYKS | low | borderline |
| TarvThla_scaffold3140218040.1 | Alkaloid | PYKS | low | borderline |
| TarvThla_scaffold3530230460.1 | Alkaloid | PYKS | high | pass |
| TarvThla_scaffold50285370.1 | Alkaloid | PYKS | high | pass |
| TarvThla_scaffold50285740.1 | Alkaloid | PYKS | low | borderline |
| TarvThla_scaffold50285750.1 | Alkaloid | PYKS | low | borderline |
| TarvThla_scaffold50286060.1 | Alkaloid | PYKS | low | borderline |
| TarvThla_scaffold520296010.1 | Alkaloid | PYKS | low | borderline |
| TarvThla_scaffold540301530.1 | Alkaloid | PYKS | low | borderline |
| TarvThla_scaffold560307720.1 | Alkaloid | PYKS | low | borderline |
| TarvThla_scaffold570308900.1 | Alkaloid | PYKS | low | borderline |
| TarvThla_scaffold60312490.1 | Alkaloid | PYKS | low | borderline |
| TarvThla_scaffold60316130.1 | Alkaloid | PYKS | low | borderline |
| TarvThla_scaffold620328470.1 | Alkaloid | PYKS | low | borderline |
| TarvThla_scaffold80361050.1 | Alkaloid | PYKS | low | borderline |
| TarvThla_scaffold80361170.1 | Alkaloid | PYKS | low | borderline |
| TarvThla_scaffold80361170.2 | Alkaloid | PYKS | low | borderline |
| TarvThla_scaffold90377170.1 | Alkaloid | PYKS | low | borderline |