PlantSME Plant secondary metabolism enzyme database

Thlaspi arvense (thlaspi_arvense)

Imported from atlas release summary for Thlaspi arvense.

1442
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.17% Alkaloid pathway 22.75% Phenylpropanoid pathway 21.08% Flavonoid pathway 11.51% Rosmarinic acid pathway 7.56% Steroid pathway 6.93%
Family Distribution
BAHD 6.37% C4H 6.2% C3'H/CYP98A 5.92% CYP76 4.28% 4CL 3.97% POD 3.72% IFS 3.69% UGT 3.24%
Other Families 62.6%
More Families (94)
T3O 114 3.21% 7DLGT 111 3.13% UFGT 110 3.1% NMT 97 2.73% DWF4/CYP90B1 96 2.71% F3H 90 2.54% F3'H/CYP75B 77 2.17% SGD 66 1.86% BR6OX2/CYP85A2 64 1.8% STR 60 1.69% CODM/T6ODM 58 1.63% SMT1/SMT2/SMT3 58 1.63% CYP71 58 1.63% ROT3/CYP90C1 53 1.49% CSE 51 1.44% TRI/TRII 50 1.41% CAS 44 1.24% T16H 43 1.21% H6H 39 1.1% IFR 38 1.07% CAD 37 1.04% BBE 30 0.85% PYKS 30 0.85% 16OMT 29 0.82% LAMT 28 0.79% F5H/CYP84A 28 0.79% CYP90D1 28 0.79% G8O/G8H 26 0.73% COMT 26 0.73% FNS 25 0.7% SLS 24 0.68% GES 23 0.65% TAT 23 0.65% TPS 23 0.65% LAC 22 0.62% GS 21 0.59% ANR 21 0.59% CCR 21 0.59% HCT 20 0.56% RAS 20 0.56% IO 17 0.48% CPD/CYP90A1 17 0.48% BR6OX1/CYP85A1 17 0.48% PAL 15 0.42% CNMT 14 0.39% F3'5'H/CYP75A 14 0.39% 7DLH 12 0.34% GGPPS 12 0.34% COR 11 0.31% 8HGO 11 0.31% ANS/LDOX 11 0.31% SQE 11 0.31% CYP51G1 11 0.31% PMT 10 0.28% MPO 9 0.25% FPPS 9 0.25% NCS 8 0.23% CHS 8 0.23% SQS/FDFT1 8 0.23% AACT 8 0.23% CYP80B1 7 0.2% CCoAOMT 7 0.2% CYP719 6 0.17% CPR 6 0.17% SMO1/SMO2 6 0.17% DFR 5 0.14% CHI 5 0.14% CYP80F1 4 0.11% DWF7 4 0.11% DET2 4 0.11% MVK 4 0.11% MVD 4 0.11% DXS 4 0.11% TYDC_DDC 3 0.08% HPPR 3 0.08% MCT/IspD 3 0.08% IDI 3 0.08% XMT_MXMT_DXMT 2 0.06% TDC 2 0.06% ISY 2 0.06% FK 2 0.06% DWF1 2 0.06% CMK/IspE 2 0.06% MDS/IspF 2 0.06% HDS/IspG 2 0.06% PMK 2 0.06% HDR/IspH 2 0.06% HMGR 2 0.06% ADC 1 0.03% CPI1 1 0.03% DWF5 1 0.03% HYD1 1 0.03% HMGS 1 0.03% DXR 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 435 19 BAHD (194) View species results
Alkaloid pathway 328 19 NMT (64) View species results
Phenylpropanoid pathway 304 11 POD (129) View species results
Flavonoid pathway 166 9 UFGT (104) View species results
Rosmarinic acid pathway 109 7 C4H (41) View species results
Steroid pathway 100 11 SMT1/SMT2/SMT3 (40) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1429 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 266 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: COR
Reset
Gene Pathway Family Confidence Status Best Target
TarvThla_scaffold130045190.1 Alkaloid COR medium pass COR__00003__sp_Q9SQ68_COR13_PAPSO
TarvThla_scaffold130045200.1 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
TarvThla_scaffold130045220.1 Alkaloid COR medium pass COR__00003__sp_Q9SQ68_COR13_PAPSO
TarvThla_scaffold130045240.1 Alkaloid COR medium pass COR__00005__sp_Q9SQ70_COR11_PAPSO
TarvThla_scaffold1690096820.1 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
TarvThla_scaffold210148810.1 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
TarvThla_scaffold40251510.1 Alkaloid COR medium pass COR__00004__sp_Q9SQ69_COR12_PAPSO
TarvThla_scaffold500291950.1 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
TarvThla_scaffold890368020.1 Alkaloid COR medium pass COR__00001__sp_B9VRJ2_COR15_PAPSO
TarvThla_scaffold890368020.2 Alkaloid COR medium pass COR__00001__sp_B9VRJ2_COR15_PAPSO
TarvThla_scaffold890368830.1 Alkaloid COR medium pass COR__00004__sp_Q9SQ69_COR12_PAPSO