PlantSME Plant secondary metabolism enzyme database

Thlaspi arvense (thlaspi_arvense)

Imported from atlas release summary for Thlaspi arvense.

1442
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (94)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 435 19 BAHD (194) View species results
Alkaloid pathway 328 19 NMT (64) View species results
Phenylpropanoid pathway 304 11 POD (129) View species results
Flavonoid pathway 166 9 UFGT (104) View species results
Rosmarinic acid pathway 109 7 C4H (41) View species results
Steroid pathway 100 11 SMT1/SMT2/SMT3 (40) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1429 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 266 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T16H
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Gene Pathway Family Confidence Status
TarvThla_scaffold100010810.1 Alkaloid T16H medium borderline
TarvThla_scaffold100010860.1 Alkaloid T16H medium borderline
TarvThla_scaffold100011350.1 Alkaloid T16H medium borderline
TarvThla_scaffold100011400.1 Alkaloid T16H medium borderline
TarvThla_scaffold100011410.1 Alkaloid T16H medium borderline
TarvThla_scaffold100011450.1 Alkaloid T16H medium borderline
TarvThla_scaffold100011460.1 Alkaloid T16H medium borderline
TarvThla_scaffold10005560.1 Alkaloid T16H medium pass
TarvThla_scaffold10005590.1 Alkaloid T16H medium borderline
TarvThla_scaffold1010013910.1 Alkaloid T16H low borderline
TarvThla_scaffold1060016050.1 Alkaloid T16H low borderline
TarvThla_scaffold110018820.1 Alkaloid T16H medium borderline
TarvThla_scaffold110019920.1 Alkaloid T16H medium borderline
TarvThla_scaffold110021830.1 Alkaloid T16H medium borderline
TarvThla_scaffold120030540.1 Alkaloid T16H medium borderline
TarvThla_scaffold130041500.1 Alkaloid T16H medium borderline
TarvThla_scaffold140062500.1 Alkaloid T16H medium borderline
TarvThla_scaffold140062530.1 Alkaloid T16H medium borderline
TarvThla_scaffold140062540.1 Alkaloid T16H medium borderline
TarvThla_scaffold140062560.1 Alkaloid T16H medium borderline
TarvThla_scaffold190111890.1 Alkaloid T16H medium borderline
TarvThla_scaffold2000134940.1 Alkaloid T16H medium borderline
TarvThla_scaffold2010136920.1 Alkaloid T16H medium borderline
TarvThla_scaffold210141450.1 Alkaloid T16H medium borderline
TarvThla_scaffold210152190.1 Alkaloid T16H medium borderline
TarvThla_scaffold230162250.1 Alkaloid T16H medium borderline
TarvThla_scaffold2580181660.1 Alkaloid T16H medium borderline
TarvThla_scaffold260182650.1 Alkaloid T16H medium borderline
TarvThla_scaffold2830194930.1 Alkaloid T16H low borderline
TarvThla_scaffold290196330.1 Alkaloid T16H medium borderline
TarvThla_scaffold3220220620.1 Alkaloid T16H medium borderline
TarvThla_scaffold360232490.1 Alkaloid T16H medium borderline
TarvThla_scaffold3630234450.1 Alkaloid T16H medium borderline
TarvThla_scaffold40252620.1 Alkaloid T16H medium borderline
TarvThla_scaffold420263110.1 Alkaloid T16H medium borderline
TarvThla_scaffold440266040.1 Alkaloid T16H medium borderline
TarvThla_scaffold480276040.1 Alkaloid T16H medium borderline
TarvThla_scaffold480276050.1 Alkaloid T16H medium borderline
TarvThla_scaffold50282730.1 Alkaloid T16H medium borderline
TarvThla_scaffold540302650.1 Alkaloid T16H medium borderline
TarvThla_scaffold60320410.1 Alkaloid T16H medium borderline
TarvThla_scaffold60321870.1 Alkaloid T16H medium borderline
TarvThla_scaffold60321920.1 Alkaloid T16H medium borderline