Thlaspi arvense (thlaspi_arvense)
Imported from atlas release summary for Thlaspi arvense.
1793
Candidate Protein Records
1442
Pathway-Level Records
3548
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
3548
Family-Level Calls
BAHD
6.37%
C4H
6.2%
C3'H/CYP98A
5.92%
CYP76
4.28%
4CL
3.97%
POD
3.72%
IFS
3.69%
UGT
3.24%
Other Families
62.6%
More Families (94)
T3O
114
3.21%
7DLGT
111
3.13%
UFGT
110
3.1%
NMT
97
2.73%
DWF4/CYP90B1
96
2.71%
F3H
90
2.54%
F3'H/CYP75B
77
2.17%
SGD
66
1.86%
BR6OX2/CYP85A2
64
1.8%
STR
60
1.69%
CODM/T6ODM
58
1.63%
SMT1/SMT2/SMT3
58
1.63%
CYP71
58
1.63%
ROT3/CYP90C1
53
1.49%
CSE
51
1.44%
TRI/TRII
50
1.41%
CAS
44
1.24%
T16H
43
1.21%
H6H
39
1.1%
IFR
38
1.07%
CAD
37
1.04%
BBE
30
0.85%
PYKS
30
0.85%
16OMT
29
0.82%
LAMT
28
0.79%
F5H/CYP84A
28
0.79%
CYP90D1
28
0.79%
G8O/G8H
26
0.73%
COMT
26
0.73%
FNS
25
0.7%
SLS
24
0.68%
GES
23
0.65%
TAT
23
0.65%
TPS
23
0.65%
LAC
22
0.62%
GS
21
0.59%
ANR
21
0.59%
CCR
21
0.59%
HCT
20
0.56%
RAS
20
0.56%
IO
17
0.48%
CPD/CYP90A1
17
0.48%
BR6OX1/CYP85A1
17
0.48%
PAL
15
0.42%
CNMT
14
0.39%
F3'5'H/CYP75A
14
0.39%
7DLH
12
0.34%
GGPPS
12
0.34%
COR
11
0.31%
8HGO
11
0.31%
ANS/LDOX
11
0.31%
SQE
11
0.31%
CYP51G1
11
0.31%
PMT
10
0.28%
MPO
9
0.25%
FPPS
9
0.25%
NCS
8
0.23%
CHS
8
0.23%
SQS/FDFT1
8
0.23%
AACT
8
0.23%
CYP80B1
7
0.2%
CCoAOMT
7
0.2%
CYP719
6
0.17%
CPR
6
0.17%
SMO1/SMO2
6
0.17%
DFR
5
0.14%
CHI
5
0.14%
CYP80F1
4
0.11%
DWF7
4
0.11%
DET2
4
0.11%
MVK
4
0.11%
MVD
4
0.11%
DXS
4
0.11%
TYDC_DDC
3
0.08%
HPPR
3
0.08%
MCT/IspD
3
0.08%
IDI
3
0.08%
XMT_MXMT_DXMT
2
0.06%
TDC
2
0.06%
ISY
2
0.06%
FK
2
0.06%
DWF1
2
0.06%
CMK/IspE
2
0.06%
MDS/IspF
2
0.06%
HDS/IspG
2
0.06%
PMK
2
0.06%
HDR/IspH
2
0.06%
HMGR
2
0.06%
ADC
1
0.03%
CPI1
1
0.03%
DWF5
1
0.03%
HYD1
1
0.03%
HMGS
1
0.03%
DXR
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 435 | 19 | BAHD (194) | View species results |
| Alkaloid pathway | 328 | 19 | NMT (64) | View species results |
| Phenylpropanoid pathway | 304 | 11 | POD (129) | View species results |
| Flavonoid pathway | 166 | 9 | UFGT (104) | View species results |
| Rosmarinic acid pathway | 109 | 7 | C4H (41) | View species results |
| Steroid pathway | 100 | 11 | SMT1/SMT2/SMT3 (40) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1429 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 266 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| TarvThla_scaffold6390331520.1 | Alkaloid | NMT | medium | pass |
| TarvThla_scaffold690337320.1 | Alkaloid | NMT | low | borderline |
| TarvThla_scaffold690337900.1 | Alkaloid | NMT | low | borderline |
| TarvThla_scaffold690337930.1 | Alkaloid | NMT | low | borderline |
| TarvThla_scaffold720347040.1 | Alkaloid | NMT | medium | pass |
| TarvThla_scaffold80353850.1 | Alkaloid | NMT | medium | pass |
| TarvThla_scaffold80356380.1 | Alkaloid | NMT | medium | pass |
| TarvThla_scaffold80356880.1 | Alkaloid | NMT | medium | borderline |
| TarvThla_scaffold80356970.1 | Alkaloid | NMT | medium | pass |
| TarvThla_scaffold80356970.2 | Alkaloid | NMT | medium | pass |
| TarvThla_scaffold80361440.1 | Alkaloid | NMT | low | borderline |
| TarvThla_scaffold90371310.1 | Alkaloid | NMT | medium | borderline |
| TarvThla_scaffold90372300.1 | Alkaloid | NMT | medium | pass |
| TarvThla_scaffold90376170.1 | Alkaloid | NMT | medium | pass |
| TarvThla_scaffold150078020.1 | Alkaloid | PMT | medium | borderline |
| TarvThla_scaffold1540081410.1 | Alkaloid | PMT | medium | borderline |
| TarvThla_scaffold1700101250.1 | Alkaloid | PMT | medium | pass |
| TarvThla_scaffold310215960.1 | Alkaloid | PMT | medium | borderline |
| TarvThla_scaffold40250290.1 | Alkaloid | PMT | low | borderline |
| TarvThla_scaffold4090257690.1 | Alkaloid | PMT | low | borderline |
| TarvThla_scaffold450268120.1 | Alkaloid | PMT | low | borderline |
| TarvThla_scaffold690336410.1 | Alkaloid | PMT | medium | pass |
| TarvThla_scaffold70342110.1 | Alkaloid | PMT | medium | pass |
| TarvThla_scaffold970385530.1 | Alkaloid | PMT | low | borderline |
| TarvThla_scaffold110018200.1 | Alkaloid | PYKS | low | borderline |
| TarvThla_scaffold110022470.1 | Alkaloid | PYKS | low | borderline |
| TarvThla_scaffold1300052040.1 | Alkaloid | PYKS | low | borderline |
| TarvThla_scaffold130039890.1 | Alkaloid | PYKS | high | pass |
| TarvThla_scaffold130048850.1 | Alkaloid | PYKS | high | pass |
| TarvThla_scaffold1580084780.1 | Alkaloid | PYKS | low | borderline |
| TarvThla_scaffold160086560.1 | Alkaloid | PYKS | low | borderline |
| TarvThla_scaffold1720102260.1 | Alkaloid | PYKS | low | borderline |
| TarvThla_scaffold180105480.1 | Alkaloid | PYKS | low | borderline |
| TarvThla_scaffold2000135100.1 | Alkaloid | PYKS | low | borderline |
| TarvThla_scaffold20129510.1 | Alkaloid | PYKS | low | borderline |
| TarvThla_scaffold210150610.1 | Alkaloid | PYKS | low | borderline |
| TarvThla_scaffold310214920.1 | Alkaloid | PYKS | low | borderline |
| TarvThla_scaffold3140218040.1 | Alkaloid | PYKS | low | borderline |
| TarvThla_scaffold3530230460.1 | Alkaloid | PYKS | high | pass |
| TarvThla_scaffold50285370.1 | Alkaloid | PYKS | high | pass |
| TarvThla_scaffold50285740.1 | Alkaloid | PYKS | low | borderline |
| TarvThla_scaffold50285750.1 | Alkaloid | PYKS | low | borderline |
| TarvThla_scaffold50286060.1 | Alkaloid | PYKS | low | borderline |
| TarvThla_scaffold520296010.1 | Alkaloid | PYKS | low | borderline |
| TarvThla_scaffold540301530.1 | Alkaloid | PYKS | low | borderline |
| TarvThla_scaffold560307720.1 | Alkaloid | PYKS | low | borderline |
| TarvThla_scaffold570308900.1 | Alkaloid | PYKS | low | borderline |
| TarvThla_scaffold60312490.1 | Alkaloid | PYKS | low | borderline |
| TarvThla_scaffold60316130.1 | Alkaloid | PYKS | low | borderline |
| TarvThla_scaffold620328470.1 | Alkaloid | PYKS | low | borderline |