PlantSME Plant secondary metabolism enzyme database

Thlaspi arvense (thlaspi_arvense)

Imported from atlas release summary for Thlaspi arvense.

1442
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (94)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 435 19 BAHD (194) View species results
Alkaloid pathway 328 19 NMT (64) View species results
Phenylpropanoid pathway 304 11 POD (129) View species results
Flavonoid pathway 166 9 UFGT (104) View species results
Rosmarinic acid pathway 109 7 C4H (41) View species results
Steroid pathway 100 11 SMT1/SMT2/SMT3 (40) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1429 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 266 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Gene Pathway Family Confidence Status
TarvThla_scaffold140059600.1 Flavonoid ANR medium borderline
TarvThla_scaffold140064380.1 Flavonoid ANR medium borderline
TarvThla_scaffold1460072870.1 Flavonoid ANR low borderline
TarvThla_scaffold1720102240.1 Flavonoid ANR medium borderline
TarvThla_scaffold190113160.1 Flavonoid ANR low borderline
TarvThla_scaffold2300168360.1 Flavonoid ANR low borderline
TarvThla_scaffold290197480.1 Flavonoid ANR medium borderline
TarvThla_scaffold3110217430.1 Flavonoid ANR low borderline
TarvThla_scaffold420261290.1 Flavonoid ANR low borderline
TarvThla_scaffold50287060.1 Flavonoid ANR low borderline
TarvThla_scaffold560306390.1 Flavonoid ANR medium borderline
TarvThla_scaffold60317950.1 Flavonoid ANR medium borderline
TarvThla_scaffold60317960.1 Flavonoid ANR medium borderline
TarvThla_scaffold700345470.1 Flavonoid ANR medium borderline
TarvThla_scaffold70342220.1 Flavonoid ANR medium borderline
TarvThla_scaffold80353810.1 Flavonoid ANR medium borderline
TarvThla_scaffold80357200.1 Flavonoid ANR high pass
TarvThla_scaffold90374440.1 Flavonoid ANR medium borderline
TarvThla_scaffold130041570.1 Flavonoid ANS/LDOX medium borderline
TarvThla_scaffold190118900.1 Flavonoid ANS/LDOX medium borderline
TarvThla_scaffold2000135430.1 Flavonoid ANS/LDOX medium borderline
TarvThla_scaffold210153380.1 Flavonoid ANS/LDOX medium borderline
TarvThla_scaffold210153390.1 Flavonoid ANS/LDOX medium borderline
TarvThla_scaffold220157110.1 Flavonoid ANS/LDOX medium borderline
TarvThla_scaffold240173060.1 Flavonoid ANS/LDOX medium borderline
TarvThla_scaffold2580181200.1 Flavonoid ANS/LDOX medium borderline
TarvThla_scaffold600322580.1 Flavonoid ANS/LDOX medium borderline
TarvThla_scaffold670334930.1 Flavonoid ANS/LDOX medium borderline
TarvThla_scaffold80355260.1 Flavonoid ANS/LDOX medium borderline
TarvThla_scaffold110019920.1 Flavonoid C4H medium borderline
TarvThla_scaffold120030710.1 Flavonoid C4H low borderline
TarvThla_scaffold170097310.1 Flavonoid C4H low borderline
TarvThla_scaffold170097320.1 Flavonoid C4H low borderline
TarvThla_scaffold170097330.1 Flavonoid C4H low borderline
TarvThla_scaffold170097350.1 Flavonoid C4H low borderline
TarvThla_scaffold210149360.1 Flavonoid C4H low borderline
TarvThla_scaffold210149360.2 Flavonoid C4H low borderline
TarvThla_scaffold620328320.1 Flavonoid C4H medium borderline
TarvThla_scaffold210147380.1 Flavonoid CHI medium pass
TarvThla_scaffold260184350.1 Flavonoid CHI medium pass
TarvThla_scaffold40246210.1 Flavonoid CHI medium pass
TarvThla_scaffold5090293260.1 Flavonoid CHI low borderline
TarvThla_scaffold5090293260.2 Flavonoid CHI low borderline
TarvThla_scaffold130039890.1 Flavonoid CHS medium pass
TarvThla_scaffold130046310.1 Flavonoid CHS medium pass
TarvThla_scaffold130048850.1 Flavonoid CHS medium pass
TarvThla_scaffold180105480.1 Flavonoid CHS medium pass
TarvThla_scaffold3460227760.1 Flavonoid CHS low borderline
TarvThla_scaffold3530230460.1 Flavonoid CHS medium pass
TarvThla_scaffold50285370.1 Flavonoid CHS medium pass