PlantSME Plant secondary metabolism enzyme database

Thlaspi arvense (thlaspi_arvense)

Imported from atlas release summary for Thlaspi arvense.

1442
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (94)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 435 19 BAHD (194) View species results
Alkaloid pathway 328 19 NMT (64) View species results
Phenylpropanoid pathway 304 11 POD (129) View species results
Flavonoid pathway 166 9 UFGT (104) View species results
Rosmarinic acid pathway 109 7 C4H (41) View species results
Steroid pathway 100 11 SMT1/SMT2/SMT3 (40) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1429 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 266 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
Reset
Gene Pathway Family Confidence Status
TarvThla_scaffold100007390.2 Flavonoid F3H low borderline
TarvThla_scaffold10000830.1 Flavonoid F3H medium borderline
TarvThla_scaffold10000930.1 Flavonoid F3H medium borderline
TarvThla_scaffold1040014640.1 Flavonoid F3H medium borderline
TarvThla_scaffold1040014680.1 Flavonoid F3H medium borderline
TarvThla_scaffold110019490.1 Flavonoid F3H medium borderline
TarvThla_scaffold110019500.1 Flavonoid F3H medium borderline
TarvThla_scaffold120030280.1 Flavonoid F3H medium pass
TarvThla_scaffold120031200.1 Flavonoid F3H low borderline
TarvThla_scaffold130043880.1 Flavonoid F3H medium borderline
TarvThla_scaffold130045760.1 Flavonoid F3H medium borderline
TarvThla_scaffold130050140.1 Flavonoid F3H medium borderline
TarvThla_scaffold140058150.1 Flavonoid F3H low borderline
TarvThla_scaffold140058160.1 Flavonoid F3H low borderline
TarvThla_scaffold140058170.1 Flavonoid F3H low borderline
TarvThla_scaffold140058180.1 Flavonoid F3H low borderline
TarvThla_scaffold140061280.1 Flavonoid F3H medium borderline
TarvThla_scaffold140061290.1 Flavonoid F3H medium borderline
TarvThla_scaffold140064930.1 Flavonoid F3H medium borderline
TarvThla_scaffold1490074100.1 Flavonoid F3H low borderline
TarvThla_scaffold160088850.1 Flavonoid F3H low borderline
TarvThla_scaffold160088860.1 Flavonoid F3H low borderline
TarvThla_scaffold160088870.1 Flavonoid F3H low borderline
TarvThla_scaffold160088880.1 Flavonoid F3H low borderline
TarvThla_scaffold160091210.1 Flavonoid F3H medium borderline
TarvThla_scaffold160092090.1 Flavonoid F3H medium borderline
TarvThla_scaffold170100400.1 Flavonoid F3H medium borderline
TarvThla_scaffold180108340.1 Flavonoid F3H medium borderline
TarvThla_scaffold180108350.1 Flavonoid F3H medium borderline
TarvThla_scaffold190111680.1 Flavonoid F3H medium borderline
TarvThla_scaffold190113200.1 Flavonoid F3H medium borderline
TarvThla_scaffold190113680.1 Flavonoid F3H medium borderline
TarvThla_scaffold190118910.1 Flavonoid F3H low borderline
TarvThla_scaffold190118920.1 Flavonoid F3H medium pass
TarvThla_scaffold190119580.1 Flavonoid F3H medium borderline
TarvThla_scaffold1950122670.1 Flavonoid F3H medium borderline
TarvThla_scaffold200133020.1 Flavonoid F3H medium borderline
TarvThla_scaffold210142190.1 Flavonoid F3H medium borderline
TarvThla_scaffold210146560.1 Flavonoid F3H medium borderline
TarvThla_scaffold210151780.1 Flavonoid F3H medium borderline
TarvThla_scaffold210152670.1 Flavonoid F3H low borderline
TarvThla_scaffold210152680.1 Flavonoid F3H low borderline
TarvThla_scaffold230164320.1 Flavonoid F3H low borderline
TarvThla_scaffold230164350.1 Flavonoid F3H low borderline
TarvThla_scaffold240173070.1 Flavonoid F3H medium borderline
TarvThla_scaffold260182010.1 Flavonoid F3H medium borderline
TarvThla_scaffold260182310.1 Flavonoid F3H medium borderline
TarvThla_scaffold260183700.1 Flavonoid F3H medium borderline
TarvThla_scaffold260184020.1 Flavonoid F3H medium borderline
TarvThla_scaffold290198420.1 Flavonoid F3H low borderline