PlantSME Plant secondary metabolism enzyme database

Thlaspi arvense (thlaspi_arvense)

Imported from atlas release summary for Thlaspi arvense.

1793
Candidate Protein Records
1442
Pathway-Level Records
3548
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (94)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 435 19 BAHD (194) View species results
Alkaloid pathway 328 19 NMT (64) View species results
Phenylpropanoid pathway 304 11 POD (129) View species results
Flavonoid pathway 166 9 UFGT (104) View species results
Rosmarinic acid pathway 109 7 C4H (41) View species results
Steroid pathway 100 11 SMT1/SMT2/SMT3 (40) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1429 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 266 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
TarvThla_scaffold620327170.1 Phenylpropanoid CSE medium pass
TarvThla_scaffold630329990.1 Phenylpropanoid CSE medium pass
TarvThla_scaffold80356260.1 Phenylpropanoid CSE medium pass
TarvThla_scaffold90378200.1 Phenylpropanoid CSE medium pass
TarvThla_scaffold920380250.1 Phenylpropanoid CSE medium pass
TarvThla_scaffold100010810.1 Phenylpropanoid F5H/CYP84A medium borderline
TarvThla_scaffold100010860.1 Phenylpropanoid F5H/CYP84A medium borderline
TarvThla_scaffold100011500.1 Phenylpropanoid F5H/CYP84A medium borderline
TarvThla_scaffold140062490.1 Phenylpropanoid F5H/CYP84A medium borderline
TarvThla_scaffold140062500.1 Phenylpropanoid F5H/CYP84A medium borderline
TarvThla_scaffold140062510.1 Phenylpropanoid F5H/CYP84A medium borderline
TarvThla_scaffold140062530.1 Phenylpropanoid F5H/CYP84A medium borderline
TarvThla_scaffold140062540.1 Phenylpropanoid F5H/CYP84A medium borderline
TarvThla_scaffold140062550.1 Phenylpropanoid F5H/CYP84A medium borderline
TarvThla_scaffold140062560.1 Phenylpropanoid F5H/CYP84A medium borderline
TarvThla_scaffold160089860.1 Phenylpropanoid F5H/CYP84A medium borderline
TarvThla_scaffold160089880.1 Phenylpropanoid F5H/CYP84A medium borderline
TarvThla_scaffold190114430.1 Phenylpropanoid F5H/CYP84A medium borderline
TarvThla_scaffold2010136920.1 Phenylpropanoid F5H/CYP84A medium borderline
TarvThla_scaffold210141460.1 Phenylpropanoid F5H/CYP84A medium borderline
TarvThla_scaffold2160156050.1 Phenylpropanoid F5H/CYP84A medium borderline
TarvThla_scaffold230167320.1 Phenylpropanoid F5H/CYP84A medium borderline
TarvThla_scaffold260182650.1 Phenylpropanoid F5H/CYP84A medium borderline
TarvThla_scaffold260183710.1 Phenylpropanoid F5H/CYP84A medium borderline
TarvThla_scaffold290196330.1 Phenylpropanoid F5H/CYP84A medium borderline
TarvThla_scaffold310211750.1 Phenylpropanoid F5H/CYP84A medium borderline
TarvThla_scaffold330222510.1 Phenylpropanoid F5H/CYP84A medium borderline
TarvThla_scaffold360232460.1 Phenylpropanoid F5H/CYP84A medium borderline
TarvThla_scaffold3630234450.1 Phenylpropanoid F5H/CYP84A medium borderline
TarvThla_scaffold480276030.1 Phenylpropanoid F5H/CYP84A medium borderline
TarvThla_scaffold480276040.1 Phenylpropanoid F5H/CYP84A medium borderline
TarvThla_scaffold540302650.1 Phenylpropanoid F5H/CYP84A medium borderline
TarvThla_scaffold90374790.1 Phenylpropanoid F5H/CYP84A medium borderline
TarvThla_scaffold100011220.1 Phenylpropanoid HCT low borderline
TarvThla_scaffold130047840.1 Phenylpropanoid HCT low borderline
TarvThla_scaffold1410069810.1 Phenylpropanoid HCT low borderline
TarvThla_scaffold1460073060.1 Phenylpropanoid HCT low borderline
TarvThla_scaffold1720102880.1 Phenylpropanoid HCT low borderline
TarvThla_scaffold1720102890.1 Phenylpropanoid HCT low borderline
TarvThla_scaffold1780105070.1 Phenylpropanoid HCT medium pass
TarvThla_scaffold200132330.1 Phenylpropanoid HCT medium pass
TarvThla_scaffold20126630.1 Phenylpropanoid HCT low borderline
TarvThla_scaffold260182470.1 Phenylpropanoid HCT low borderline
TarvThla_scaffold290198150.1 Phenylpropanoid HCT medium pass
TarvThla_scaffold2930199440.1 Phenylpropanoid HCT low borderline
TarvThla_scaffold310215780.1 Phenylpropanoid HCT low borderline
TarvThla_scaffold3480228540.1 Phenylpropanoid HCT low borderline
TarvThla_scaffold40250290.1 Phenylpropanoid HCT medium pass
TarvThla_scaffold4090257690.1 Phenylpropanoid HCT medium pass
TarvThla_scaffold480276020.1 Phenylpropanoid HCT low borderline