PlantSME Plant secondary metabolism enzyme database

Toona sinensis (toona_sinensis)

Imported from atlas release summary for Toona sinensis.

1192
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 32.05% Phenylpropanoid pathway 22.32% Alkaloid pathway 19.38% Flavonoid pathway 13.76% Steroid pathway 6.29% Rosmarinic acid pathway 6.21%
Family Distribution
BAHD 7.5% POD 5.83% C4H 5.22% 4CL 4.75% UGT 4.27% C3'H/CYP98A 4.04% NMT 3.36% F3H 3.12%
Other Families 61.91%
More Families (98)
7DLGT 90 3.05% IFS 90 3.05% CYP76 86 2.92% UFGT 72 2.44% H6H 57 1.93% T3O 57 1.93% SMT1/SMT2/SMT3 57 1.93% IFR 54 1.83% F3'H/CYP75B 54 1.83% DWF4/CYP90B1 54 1.83% STR 50 1.7% CODM/T6ODM 49 1.66% CAD 41 1.39% CYP71 41 1.39% CAS 34 1.15% G8O/G8H 32 1.09% BR6OX2/CYP85A2 32 1.09% GS 29 0.98% CYP90D1 29 0.98% PYKS 28 0.95% FNS 28 0.95% CCR 27 0.92% CSE 26 0.88% LAC 26 0.88% 7DLH 24 0.81% T16H 23 0.78% DFR 23 0.78% SGD 22 0.75% ANR 22 0.75% IO 21 0.71% NCS 20 0.68% CHS 20 0.68% HCT 20 0.68% SLS 18 0.61% ANS/LDOX 18 0.61% CPD/CYP90A1 18 0.61% F3'5'H/CYP75A 17 0.58% RAS 17 0.58% TRI/TRII 15 0.51% CNMT 15 0.51% 8HGO 15 0.51% TAT 15 0.51% CPR 15 0.51% COMT 14 0.47% TPS 14 0.47% AACT 13 0.44% GES 11 0.37% PMT 11 0.37% CYP719 11 0.37% F5H/CYP84A 11 0.37% BR6OX1/CYP85A1 11 0.37% ROT3/CYP90C1 11 0.37% COR 10 0.34% CYP80B1 10 0.34% ISY 10 0.34% CCoAOMT 10 0.34% GGPPS 9 0.31% MPO 8 0.27% SQE 8 0.27% SMO1/SMO2 8 0.27% FPPS 8 0.27% MVD 7 0.24% DXS 7 0.24% MVK 7 0.24% TYDC_DDC 6 0.2% 6OMT_4OMT_SOMT 6 0.2% CYP51G1 6 0.2% MCT/IspD 6 0.2% HMGR 6 0.2% 16OMT 5 0.17% XMT_MXMT_DXMT 5 0.17% HPPR 5 0.17% SQS/FDFT1 5 0.17% PMK 5 0.17% LAMT 4 0.14% CHI 4 0.14% DET2 4 0.14% DWF7 4 0.14% HMGS 4 0.14% CMK/IspE 4 0.14% TDC 3 0.1% ADC 3 0.1% PAL 3 0.1% HYD1 3 0.1% IDI 3 0.1% ODC 2 0.07% DWF5 2 0.07% DWF1 2 0.07% GPPS 2 0.07% HDS/IspG 2 0.07% MDS/IspF 2 0.07% DXR 2 0.07% HDR/IspH 2 0.07% CYP80F1 1 0.03% BBE 1 0.03% FLS 1 0.03% FK 1 0.03% CPI1 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 382 20 BAHD (162) View species results
Phenylpropanoid pathway 266 12 POD (149) View species results
Alkaloid pathway 231 23 NMT (62) View species results
Flavonoid pathway 164 14 UFGT (59) View species results
Steroid pathway 75 12 SMT1/SMT2/SMT3 (26) View species results
Rosmarinic acid pathway 74 7 4CL (28) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 930 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 258 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: COR
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Gene Pathway Family Confidence Status Best Target
TOsin05G0006460 Alkaloid COR low borderline COR__00001__sp_B9VRJ2_COR15_PAPSO
TOsin05G0006470 Alkaloid COR low borderline COR__00005__sp_Q9SQ70_COR11_PAPSO
TOsin06G0002980 Alkaloid COR low borderline COR__00001__sp_B9VRJ2_COR15_PAPSO
TOsin07G0007870 Alkaloid COR low borderline COR__00004__sp_Q9SQ69_COR12_PAPSO
TOsin08G0003590 Alkaloid COR medium pass COR__00004__sp_Q9SQ69_COR12_PAPSO
TOsin13G0002700 Alkaloid COR medium pass COR__00001__sp_B9VRJ2_COR15_PAPSO
TOsin13G0002990 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
TOsin14G0008660 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
TOsin24G0014220 Alkaloid COR low borderline COR__00002__sp_Q9SQ67_COR14_PAPSO
TOsin28G0005490 Alkaloid COR medium pass COR__00004__sp_Q9SQ69_COR12_PAPSO