PlantSME Plant secondary metabolism enzyme database

Arabis alpina (arabis_alpina)

Imported from atlas release summary for Arabis alpina.

1406
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (94)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 426 19 BAHD (197) View species results
Alkaloid pathway 322 18 SGD (62) View species results
Phenylpropanoid pathway 264 11 POD (121) View species results
Flavonoid pathway 175 9 UFGT (116) View species results
Rosmarinic acid pathway 113 7 C4H (48) View species results
Steroid pathway 106 13 SMT1/SMT2/SMT3 (44) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1300 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 285 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
Reset
Gene Pathway Family Confidence Status
Aalp04G0012180 Rosmarinic Acid C4H low borderline
Aalp04G0012190 Rosmarinic Acid C4H low borderline
Aalp04G0012200 Rosmarinic Acid C4H low borderline
Aalp04G0015080 Rosmarinic Acid C4H medium pass
Aalp04G0015110 Rosmarinic Acid C4H medium pass
Aalp04G0015120 Rosmarinic Acid C4H medium pass
Aalp04G0016650 Rosmarinic Acid C4H low borderline
Aalp04G0017650 Rosmarinic Acid C4H medium pass
Aalp04G0017660 Rosmarinic Acid C4H low borderline
Aalp04G0018260 Rosmarinic Acid C4H low borderline
Aalp04G0025050 Rosmarinic Acid C4H low borderline
Aalp04G0025560 Rosmarinic Acid C4H medium pass
Aalp04G0026000 Rosmarinic Acid C4H low borderline
Aalp04G0027740 Rosmarinic Acid C4H low borderline
Aalp04G0029500 Rosmarinic Acid C4H low borderline
Aalp04G0033370 Rosmarinic Acid C4H medium pass
Aalp04G0036990 Rosmarinic Acid C4H low borderline
Aalp04G0037940 Rosmarinic Acid C4H medium pass
Aalp04G0039180 Rosmarinic Acid C4H medium pass
Aalp04G0039190 Rosmarinic Acid C4H low borderline
Aalp04G0039220 Rosmarinic Acid C4H low borderline
Aalp04G0039230 Rosmarinic Acid C4H medium pass
Aalp04G0039250 Rosmarinic Acid C4H low borderline
Aalp04G0039570 Rosmarinic Acid C4H low borderline
Aalp04G0043690 Rosmarinic Acid C4H low borderline
Aalp04G0043700 Rosmarinic Acid C4H low borderline
Aalp04G0043710 Rosmarinic Acid C4H low borderline
Aalp04G0043740 Rosmarinic Acid C4H low borderline
Aalp04G0043750 Rosmarinic Acid C4H low borderline
Aalp04G0043760 Rosmarinic Acid C4H low borderline
Aalp04G0043770 Rosmarinic Acid C4H medium pass
Aalp04G0043780 Rosmarinic Acid C4H medium pass
Aalp04G0043790 Rosmarinic Acid C4H medium pass
Aalp04G0043800 Rosmarinic Acid C4H medium pass
Aalp04G0043810 Rosmarinic Acid C4H medium pass
Aalp04G0045000 Rosmarinic Acid C4H low borderline
Aalp04G0045280 Rosmarinic Acid C4H low borderline
Aalp05G0001050 Rosmarinic Acid C4H low borderline
Aalp05G0003800 Rosmarinic Acid C4H low borderline
Aalp05G0003830 Rosmarinic Acid C4H medium pass
Aalp05G0003840 Rosmarinic Acid C4H medium pass
Aalp05G0003850 Rosmarinic Acid C4H medium pass
Aalp05G0003870 Rosmarinic Acid C4H low borderline
Aalp05G0003880 Rosmarinic Acid C4H medium pass
Aalp05G0003890 Rosmarinic Acid C4H low borderline
Aalp05G0003900 Rosmarinic Acid C4H low borderline
Aalp05G0003910 Rosmarinic Acid C4H low borderline
Aalp05G0003920 Rosmarinic Acid C4H low borderline
Aalp05G0003930 Rosmarinic Acid C4H low borderline
Aalp05G0004680 Rosmarinic Acid C4H low borderline