PlantSME Plant secondary metabolism enzyme database

Armoracia rusticana (armoracia_rusticana)

Imported from atlas release summary for Armoracia rusticana.

2486
Candidate Protein Records
1929
Pathway-Level Records
4837
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 28.56% Phenylpropanoid pathway 23.07% Alkaloid pathway 20.58% Flavonoid pathway 11.98% Rosmarinic acid pathway 8.97% Steroid pathway 6.84%
Family Distribution
BAHD 6.47% C3'H/CYP98A 6.12% C4H 6.1% POD 4.55% 4CL 4.53% CYP76 4.03% IFS 3.62% UGT 3.39%
Other Families 61.19%
More Families (96)
7DLGT 144 2.98% UFGT 142 2.94% NMT 137 2.83% T3O 132 2.73% F3H 127 2.63% DWF4/CYP90B1 120 2.48% BR6OX2/CYP85A2 108 2.23% STR 94 1.94% F3'H/CYP75B 92 1.9% CODM/T6ODM 87 1.8% SMT1/SMT2/SMT3 75 1.55% SGD 74 1.53% H6H 67 1.39% CSE 63 1.3% CYP71 63 1.3% IFR 59 1.22% CAD 54 1.12% G8O/G8H 52 1.08% TRI/TRII 51 1.05% T16H 50 1.03% LAC 45 0.93% IO 43 0.89% TAT 42 0.87% CAS 42 0.87% BBE 40 0.83% COMT 39 0.81% FNS 38 0.79% GS 37 0.76% CCR 35 0.72% ANR 32 0.66% PYKS 31 0.64% LAMT 31 0.64% RAS 31 0.64% SLS 30 0.62% F3'5'H/CYP75A 29 0.6% CYP90D1 27 0.56% HCT 25 0.52% PAL 24 0.5% F5H/CYP84A 23 0.48% CPD/CYP90A1 23 0.48% BR6OX1/CYP85A1 22 0.45% 7DLH 21 0.43% 8HGO 20 0.41% ANS/LDOX 20 0.41% SQE 20 0.41% CYP51G1 20 0.41% NCS 18 0.37% 16OMT 18 0.37% TPS 17 0.35% GES 16 0.33% DFR 16 0.33% CPR 14 0.29% FPPS 14 0.29% COR 13 0.27% MPO 13 0.27% GGPPS 13 0.27% PMT 12 0.25% CCoAOMT 12 0.25% AACT 11 0.23% CNMT 10 0.21% SMO1/SMO2 10 0.21% CYP80B1 9 0.19% CHS 9 0.19% DET2 9 0.19% ROT3/CYP90C1 9 0.19% MVD 9 0.19% MCT/IspD 9 0.19% CYP719 8 0.17% CHI 8 0.17% CYP80F1 7 0.14% DXS 7 0.14% XMT_MXMT_DXMT 6 0.12% ISY 5 0.1% DWF7 5 0.1% SQS/FDFT1 5 0.1% DWF1 5 0.1% HDS/IspG 5 0.1% PMK 5 0.1% MVK 5 0.1% CPI1 4 0.08% HMGR 4 0.08% IDI 4 0.08% TDC 3 0.06% ADC 3 0.06% FLS 3 0.06% HPPR 3 0.06% DWF5 3 0.06% MDS/IspF 3 0.06% HDR/IspH 3 0.06% DXR 3 0.06% TYDC_DDC 2 0.04% FK 2 0.04% HYD1 2 0.04% CMK/IspE 2 0.04% HMGS 2 0.04% 6OMT_4OMT_SOMT 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 551 21 BAHD (247) View species results
Phenylpropanoid pathway 445 12 POD (205) View species results
Alkaloid pathway 397 19 NMT (81) View species results
Flavonoid pathway 231 10 UFGT (131) View species results
Rosmarinic acid pathway 173 7 C4H (65) View species results
Steroid pathway 132 14 SMT1/SMT2/SMT3 (46) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1849 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 369 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: POD
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Protein/Isoform Record Pathway Family Confidence Status Best Target
armoracia_rusticana_Arr6998 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
armoracia_rusticana_Arr7022 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
armoracia_rusticana_Arr7225 Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
armoracia_rusticana_Arr7233 Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
armoracia_rusticana_Arr7234 Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
armoracia_rusticana_Arr7946 Phenylpropanoid POD medium pass POD__00006__sp_O22850_GPX3_ARATH
armoracia_rusticana_Arr8139 Phenylpropanoid POD medium pass POD__00013__sp_Q4W1I8_PER1_ZINEL
armoracia_rusticana_Arr8489 Phenylpropanoid POD medium pass POD__00028__sp_Q9ZVD5_AGO4_ARATH
armoracia_rusticana_Arr8725 Phenylpropanoid POD medium pass POD__00002__sp_A5H8G4_PER1_MAIZE
armoracia_rusticana_Arr907 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
armoracia_rusticana_Arr9147 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
armoracia_rusticana_Arr9242 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
armoracia_rusticana_Arr931 Phenylpropanoid POD medium pass POD__00015__sp_Q69SV0_APX8_ORYSJ
armoracia_rusticana_Arr9326 Phenylpropanoid POD low borderline POD__00028__sp_Q9ZVD5_AGO4_ARATH
armoracia_rusticana_Arr9360 Phenylpropanoid POD medium pass POD__00028__sp_Q9ZVD5_AGO4_ARATH
armoracia_rusticana_Arr9361 Phenylpropanoid POD medium pass POD__00028__sp_Q9ZVD5_AGO4_ARATH
armoracia_rusticana_Arr9463 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
armoracia_rusticana_Arr9464 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
armoracia_rusticana_Arr9548 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
armoracia_rusticana_Arr9709 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC