Callicarpa americana (callicarpa_americana)
Imported from atlas release summary for Callicarpa americana.
3128
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
3128
Candidate Genes
C4H
6.8%
BAHD
6.15%
C3'H/CYP98A
6.11%
IFS
4.26%
CYP76
3.68%
T3O
3.58%
UGT
3.54%
UFGT
3.27%
Other Families
62.61%
More Families (97)
4CL
264
3.27%
7DLGT
262
3.25%
NMT
228
2.82%
POD
220
2.73%
DWF4/CYP90B1
215
2.66%
F3H
199
2.47%
STR
172
2.13%
CAD
162
2.01%
F3'H/CYP75B
158
1.96%
BR6OX2/CYP85A2
132
1.64%
SMT1/SMT2/SMT3
131
1.62%
CAS
130
1.61%
CYP71
128
1.59%
H6H
116
1.44%
TPS
110
1.36%
GES
103
1.28%
IFR
99
1.23%
CODM/T6ODM
93
1.15%
ANR
92
1.14%
CYP90D1
89
1.1%
7DLH
87
1.08%
SGD
81
1.0%
LAC
73
0.9%
T16H
67
0.83%
TRI/TRII
66
0.82%
COMT
66
0.82%
HCT
63
0.78%
GS
59
0.73%
SLS
57
0.71%
BBE
53
0.66%
CSE
53
0.66%
CPD/CYP90A1
51
0.63%
IO
50
0.62%
G8O/G8H
49
0.61%
PMT
49
0.61%
CCR
48
0.59%
RAS
48
0.59%
FNS
46
0.57%
NCS
42
0.52%
F3'5'H/CYP75A
41
0.51%
PYKS
38
0.47%
16OMT
37
0.46%
8HGO
37
0.46%
F5H/CYP84A
37
0.46%
TAT
37
0.46%
CYP51G1
37
0.46%
BR6OX1/CYP85A1
34
0.42%
FPPS
34
0.42%
LAMT
31
0.38%
CCoAOMT
29
0.36%
AACT
29
0.36%
COR
27
0.33%
CNMT
26
0.32%
CPR
24
0.3%
SQE
24
0.3%
DXS
22
0.27%
SQS/FDFT1
21
0.26%
DFR
20
0.25%
MPO
18
0.22%
PAL
18
0.22%
GGPPS
18
0.22%
CYP80B1
16
0.2%
ANS/LDOX
15
0.19%
ISY
14
0.17%
SMO1/SMO2
13
0.16%
CHS
12
0.15%
ROT3/CYP90C1
9
0.11%
TDC
8
0.1%
TYDC_DDC
8
0.1%
HPPR
8
0.1%
6OMT_4OMT_SOMT
7
0.09%
DET2
7
0.09%
HMGR
7
0.09%
CHI
6
0.07%
MVD
6
0.07%
CYP719
5
0.06%
MVK
5
0.06%
CYP80F1
4
0.05%
MDS/IspF
4
0.05%
PMK
4
0.05%
HDR/IspH
4
0.05%
MCT/IspD
4
0.05%
DXR
4
0.05%
HDS/IspG
4
0.05%
CPI1
3
0.04%
FK
3
0.04%
HMGS
3
0.04%
GPPS
3
0.04%
IDI
3
0.04%
ADC
2
0.02%
XMT_MXMT_DXMT
2
0.02%
DWF7
2
0.02%
DWF1
2
0.02%
HYD1
2
0.02%
CMK/IspE
2
0.02%
FLS
1
0.01%
DWF5
1
0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 968 | 19 | BAHD (410) | View species results |
| Alkaloid pathway | 642 | 24 | 7DLGT (114) | View species results |
| Phenylpropanoid pathway | 589 | 13 | POD (215) | View species results |
| Flavonoid pathway | 360 | 12 | UFGT (248) | View species results |
| Rosmarinic acid pathway | 290 | 7 | C4H (148) | View species results |
| Steroid pathway | 279 | 12 | CAS (115) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 3238 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 607 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| CAame01G0005210 | Alkaloid | 16OMT | medium | borderline | 16OMT__00001__sp_B0EXJ8_HTOMT_CATRO |
| CAame01G0005220 | Alkaloid | 16OMT | medium | borderline | 16OMT__00001__sp_B0EXJ8_HTOMT_CATRO |
| CAame01G0007400 | Alkaloid | 16OMT | medium | borderline | 16OMT__00001__sp_B0EXJ8_HTOMT_CATRO |
| CAame01G0007410 | Alkaloid | 16OMT | medium | borderline | 16OMT__00001__sp_B0EXJ8_HTOMT_CATRO |
| CAame05G0044720 | Alkaloid | 16OMT | medium | borderline | 16OMT__00001__sp_B0EXJ8_HTOMT_CATRO |
| CAame05G0044730 | Alkaloid | 16OMT | medium | borderline | 16OMT__00001__sp_B0EXJ8_HTOMT_CATRO |
| CAame05G0044740 | Alkaloid | 16OMT | medium | borderline | 16OMT__00001__sp_B0EXJ8_HTOMT_CATRO |
| CAame05G0044750 | Alkaloid | 16OMT | medium | borderline | 16OMT__00001__sp_B0EXJ8_HTOMT_CATRO |
| CAame06G0003580 | Alkaloid | 16OMT | medium | borderline | 16OMT__00001__sp_B0EXJ8_HTOMT_CATRO |
| CAame13G0015630 | Alkaloid | 16OMT | medium | borderline | 16OMT__00001__sp_B0EXJ8_HTOMT_CATRO |
| CAame13G0015660 | Alkaloid | 16OMT | medium | borderline | 16OMT__00001__sp_B0EXJ8_HTOMT_CATRO |
| CAame13G0015680 | Alkaloid | 16OMT | medium | pass | 16OMT__00001__sp_B0EXJ8_HTOMT_CATRO |
| CAame13G0015700 | Alkaloid | 16OMT | medium | borderline | 16OMT__00001__sp_B0EXJ8_HTOMT_CATRO |
| CAame13G0015710 | Alkaloid | 16OMT | medium | borderline | 16OMT__00001__sp_B0EXJ8_HTOMT_CATRO |
| CAame13G0015720 | Alkaloid | 16OMT | medium | borderline | 16OMT__00001__sp_B0EXJ8_HTOMT_CATRO |
| CAame13G0015730 | Alkaloid | 16OMT | medium | borderline | 16OMT__00001__sp_B0EXJ8_HTOMT_CATRO |
| CAame13G0015740 | Alkaloid | 16OMT | medium | borderline | 16OMT__00001__sp_B0EXJ8_HTOMT_CATRO |
| CAame13G0015750 | Alkaloid | 16OMT | medium | borderline | 16OMT__00001__sp_B0EXJ8_HTOMT_CATRO |
| CAame13G0015760 | Alkaloid | 16OMT | medium | borderline | 16OMT__00001__sp_B0EXJ8_HTOMT_CATRO |
| CAame13G0015770 | Alkaloid | 16OMT | medium | borderline | 16OMT__00001__sp_B0EXJ8_HTOMT_CATRO |
| CAame13G0015780 | Alkaloid | 16OMT | medium | borderline | 16OMT__00001__sp_B0EXJ8_HTOMT_CATRO |
| CAame13G0015790 | Alkaloid | 16OMT | medium | borderline | 16OMT__00001__sp_B0EXJ8_HTOMT_CATRO |
| CAame13G0015800 | Alkaloid | 16OMT | medium | borderline | 16OMT__00001__sp_B0EXJ8_HTOMT_CATRO |
| CAame14G0018020 | Alkaloid | 16OMT | medium | borderline | 16OMT__00001__sp_B0EXJ8_HTOMT_CATRO |
| CAame14G0018030 | Alkaloid | 16OMT | medium | borderline | 16OMT__00001__sp_B0EXJ8_HTOMT_CATRO |
| CAame14G0018070 | Alkaloid | 16OMT | medium | borderline | 16OMT__00001__sp_B0EXJ8_HTOMT_CATRO |
| CAame14G0018080 | Alkaloid | 16OMT | medium | borderline | 16OMT__00001__sp_B0EXJ8_HTOMT_CATRO |
| CAame14G0018090 | Alkaloid | 16OMT | medium | borderline | 16OMT__00001__sp_B0EXJ8_HTOMT_CATRO |
| CAame14G0018100 | Alkaloid | 16OMT | medium | borderline | 16OMT__00001__sp_B0EXJ8_HTOMT_CATRO |
| CAame14G0018130 | Alkaloid | 16OMT | medium | borderline | 16OMT__00001__sp_B0EXJ8_HTOMT_CATRO |
| CAame14G0018150 | Alkaloid | 16OMT | medium | borderline | 16OMT__00001__sp_B0EXJ8_HTOMT_CATRO |
| CAame14G0018160 | Alkaloid | 16OMT | medium | borderline | 16OMT__00001__sp_B0EXJ8_HTOMT_CATRO |
| CAame15G0017470 | Alkaloid | 16OMT | medium | borderline | 16OMT__00001__sp_B0EXJ8_HTOMT_CATRO |
| CAame17G0006340 | Alkaloid | 16OMT | medium | borderline | 16OMT__00001__sp_B0EXJ8_HTOMT_CATRO |
| CAame17G0006350 | Alkaloid | 16OMT | medium | borderline | 16OMT__00001__sp_B0EXJ8_HTOMT_CATRO |
| CAame17G0006370 | Alkaloid | 16OMT | medium | borderline | 16OMT__00001__sp_B0EXJ8_HTOMT_CATRO |
| CAame17G0006380 | Alkaloid | 16OMT | medium | borderline | 16OMT__00001__sp_B0EXJ8_HTOMT_CATRO |
| CAame02G0019360 | Alkaloid | 6OMT_4OMT_SOMT | medium | borderline | 6OMT_4OMT_SOMT__00006__sp_Q7XB11_4OMT1_PAPSO |
| CAame02G0020190 | Alkaloid | 6OMT_4OMT_SOMT | medium | borderline | 6OMT_4OMT_SOMT__00007__sp_Q9LEL6_6OMT_COPJA |
| CAame02G0020250 | Alkaloid | 6OMT_4OMT_SOMT | medium | borderline | 6OMT_4OMT_SOMT__00005__sp_Q7XB10_4OMT2_PAPSO |
| CAame02G0020270 | Alkaloid | 6OMT_4OMT_SOMT | medium | borderline | 6OMT_4OMT_SOMT__00006__sp_Q7XB11_4OMT1_PAPSO |
| CAame06G0000790 | Alkaloid | 6OMT_4OMT_SOMT | medium | borderline | 6OMT_4OMT_SOMT__00003__sp_Q5C9L7_6OMT_THLFG |
| CAame13G0015670 | Alkaloid | 6OMT_4OMT_SOMT | medium | pass | 6OMT_4OMT_SOMT__00001__sp_D3KY98_OMT1_CARIP |
| CAame13G0015690 | Alkaloid | 6OMT_4OMT_SOMT | medium | borderline | 6OMT_4OMT_SOMT__00004__sp_Q6WUC1_6OMT_PAPSO |
| CAame01G0001140 | Alkaloid | 7DLGT | medium | pass | 7DLGT__00001__sp_U3U992_UGT8_CATRO |
| CAame01G0001150 | Alkaloid | 7DLGT | medium | pass | 7DLGT__00001__sp_U3U992_UGT8_CATRO |
| CAame01G0001160 | Alkaloid | 7DLGT | low | borderline | 7DLGT__00001__sp_U3U992_UGT8_CATRO |
| CAame01G0001400 | Alkaloid | 7DLGT | low | borderline | 7DLGT__00002__sp_U5NH37_7DLGT_CATRO |
| CAame01G0001410 | Alkaloid | 7DLGT | medium | pass | 7DLGT__00001__sp_U3U992_UGT8_CATRO |
| CAame01G0004780 | Alkaloid | 7DLGT | medium | pass | 7DLGT__00001__sp_U3U992_UGT8_CATRO |