PlantSME Plant secondary metabolism enzyme database

Callicarpa americana (callicarpa_americana)

Imported from atlas release summary for Callicarpa americana.

3128
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.95% Alkaloid pathway 20.52% Phenylpropanoid pathway 18.83% Flavonoid pathway 11.51% Rosmarinic acid pathway 9.27% Steroid pathway 8.92%
Family Distribution
C4H 6.8% BAHD 6.15% C3'H/CYP98A 6.11% IFS 4.26% CYP76 3.68% T3O 3.58% UGT 3.54% UFGT 3.27%
Other Families 62.61%
More Families (97)
4CL 264 3.27% 7DLGT 262 3.25% NMT 228 2.82% POD 220 2.73% DWF4/CYP90B1 215 2.66% F3H 199 2.47% STR 172 2.13% CAD 162 2.01% F3'H/CYP75B 158 1.96% BR6OX2/CYP85A2 132 1.64% SMT1/SMT2/SMT3 131 1.62% CAS 130 1.61% CYP71 128 1.59% H6H 116 1.44% TPS 110 1.36% GES 103 1.28% IFR 99 1.23% CODM/T6ODM 93 1.15% ANR 92 1.14% CYP90D1 89 1.1% 7DLH 87 1.08% SGD 81 1.0% LAC 73 0.9% T16H 67 0.83% TRI/TRII 66 0.82% COMT 66 0.82% HCT 63 0.78% GS 59 0.73% SLS 57 0.71% BBE 53 0.66% CSE 53 0.66% CPD/CYP90A1 51 0.63% IO 50 0.62% G8O/G8H 49 0.61% PMT 49 0.61% CCR 48 0.59% RAS 48 0.59% FNS 46 0.57% NCS 42 0.52% F3'5'H/CYP75A 41 0.51% PYKS 38 0.47% 16OMT 37 0.46% 8HGO 37 0.46% F5H/CYP84A 37 0.46% TAT 37 0.46% CYP51G1 37 0.46% BR6OX1/CYP85A1 34 0.42% FPPS 34 0.42% LAMT 31 0.38% CCoAOMT 29 0.36% AACT 29 0.36% COR 27 0.33% CNMT 26 0.32% CPR 24 0.3% SQE 24 0.3% DXS 22 0.27% SQS/FDFT1 21 0.26% DFR 20 0.25% MPO 18 0.22% PAL 18 0.22% GGPPS 18 0.22% CYP80B1 16 0.2% ANS/LDOX 15 0.19% ISY 14 0.17% SMO1/SMO2 13 0.16% CHS 12 0.15% ROT3/CYP90C1 9 0.11% TDC 8 0.1% TYDC_DDC 8 0.1% HPPR 8 0.1% 6OMT_4OMT_SOMT 7 0.09% DET2 7 0.09% HMGR 7 0.09% CHI 6 0.07% MVD 6 0.07% CYP719 5 0.06% MVK 5 0.06% CYP80F1 4 0.05% MDS/IspF 4 0.05% PMK 4 0.05% HDR/IspH 4 0.05% MCT/IspD 4 0.05% DXR 4 0.05% HDS/IspG 4 0.05% CPI1 3 0.04% FK 3 0.04% HMGS 3 0.04% GPPS 3 0.04% IDI 3 0.04% ADC 2 0.02% XMT_MXMT_DXMT 2 0.02% DWF7 2 0.02% DWF1 2 0.02% HYD1 2 0.02% CMK/IspE 2 0.02% FLS 1 0.01% DWF5 1 0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 968 19 BAHD (410) View species results
Alkaloid pathway 642 24 7DLGT (114) View species results
Phenylpropanoid pathway 589 13 POD (215) View species results
Flavonoid pathway 360 12 UFGT (248) View species results
Rosmarinic acid pathway 290 7 C4H (148) View species results
Steroid pathway 279 12 CAS (115) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 3238 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 607 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TYDC_DDC
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Gene Pathway Family Confidence Status Best Target
CAame05G0004760 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
CAame05G0004770 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
CAame08G0017410 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
CAame08G0017420 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
CAame08G0017440 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
CAame08G0017450 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
CAame08G0017460 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
CAame13G0029710 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO