PlantSME Plant secondary metabolism enzyme database

Calliergon cordifolium (calliergon_cordifolium)

Imported from atlas release summary for Calliergon cordifolium.

877
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 27.14% Terpenoid pathway 23.26% Alkaloid pathway 19.04% Flavonoid pathway 12.66% Rosmarinic acid pathway 10.72% Steroid pathway 7.18%
Family Distribution
C4H 7.16% POD 5.86% 4CL 5.51% C3'H/CYP98A 5.28% BAHD 5.19% CYP76 4.07% NMT 3.49% IFS 2.95%
Other Families 60.47%
More Families (96)
F3H 60 2.69% PAL 60 2.69% BR6OX2/CYP85A2 51 2.28% DWF4/CYP90B1 51 2.28% STR 49 2.19% F3'H/CYP75B 47 2.1% GS 45 2.01% IFR 43 1.92% T3O 41 1.84% CODM/T6ODM 39 1.75% UGT 38 1.7% PYKS 35 1.57% 7DLGT 31 1.39% IO 31 1.39% UFGT 31 1.39% CAD 30 1.34% CAS 28 1.25% H6H 27 1.21% TRI/TRII 25 1.12% T16H 25 1.12% CHS 24 1.07% CYP71 24 1.07% G8O/G8H 22 0.98% SMT1/SMT2/SMT3 22 0.98% COMT 21 0.94% F3'5'H/CYP75A 20 0.9% CSE 18 0.81% NCS 17 0.76% CYP90D1 17 0.76% CPD/CYP90A1 17 0.76% 7DLH 16 0.72% SLS 16 0.72% ANR 16 0.72% FNS 15 0.67% CCR 13 0.58% HCT 13 0.58% 8HGO 11 0.49% LAC 11 0.49% RAS 10 0.45% PMT 9 0.4% SGD 9 0.4% F5H/CYP84A 9 0.4% CYP719 8 0.36% BBE 8 0.36% CNMT 8 0.36% DWF5 8 0.36% SQS/FDFT1 8 0.36% AACT 8 0.36% TDC 7 0.31% 16OMT 7 0.31% CPR 7 0.31% LAMT 6 0.27% COR 6 0.27% TAT 6 0.27% CYP80B1 5 0.22% ADC 5 0.22% TYDC_DDC 5 0.22% MPO 5 0.22% DFR 5 0.22% ANS/LDOX 5 0.22% BR6OX1/CYP85A1 5 0.22% MVK 5 0.22% GGPPS 5 0.22% 6OMT_4OMT_SOMT 4 0.18% CHI 4 0.18% DWF1 4 0.18% CPI1 4 0.18% SQE 4 0.18% PMK 4 0.18% HDS/IspG 4 0.18% MVD 4 0.18% GES 3 0.13% FLS 3 0.13% HPPR 3 0.13% ROT3/CYP90C1 3 0.13% DET2 3 0.13% MCT/IspD 3 0.13% CMK/IspE 3 0.13% FPPS 3 0.13% XMT_MXMT_DXMT 2 0.09% CYP80F1 2 0.09% CCoAOMT 2 0.09% FK 2 0.09% DWF7 2 0.09% DXS 2 0.09% IDI 2 0.09% TPS 2 0.09% HMGS 2 0.09% ISY 1 0.04% CYP51G1 1 0.04% HYD1 1 0.04% SMO1/SMO2 1 0.04% GPPS 1 0.04% HDR/IspH 1 0.04% MDS/IspF 1 0.04% HMGR 1 0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 238 10 POD (125) View species results
Terpenoid pathway 204 18 BAHD (82) View species results
Alkaloid pathway 167 23 NMT (34) View species results
Flavonoid pathway 111 9 4CL (26) View species results
Rosmarinic acid pathway 94 7 4CL (26) View species results
Steroid pathway 63 15 CAS (25) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 846 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 139 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CPD/CYP90A1
Reset
Gene Pathway Family Confidence Status
Ccor1783040040250 Steroid CPD/CYP90A1 medium borderline
Ccor1943610060030 Steroid CPD/CYP90A1 low borderline
Ccor2277410085460 Steroid CPD/CYP90A1 low borderline
Ccor2340150104560 Steroid CPD/CYP90A1 medium borderline
Ccor2349970107960 Steroid CPD/CYP90A1 medium borderline
Ccor2410050118790 Steroid CPD/CYP90A1 low borderline
Ccor2470400135750 Steroid CPD/CYP90A1 medium borderline
Ccor2473040137940 Steroid CPD/CYP90A1 medium borderline
Ccor2498790153590 Steroid CPD/CYP90A1 medium borderline
Ccor2498790153630 Steroid CPD/CYP90A1 medium borderline
Ccor2599250233540 Steroid CPD/CYP90A1 medium borderline
Ccor2601350235900 Steroid CPD/CYP90A1 low borderline
Ccor2628900280230 Steroid CPD/CYP90A1 low borderline
Ccor2630380283380 Steroid CPD/CYP90A1 low borderline
Ccor2635350297920 Steroid CPD/CYP90A1 low borderline
Ccor2640390313230 Steroid CPD/CYP90A1 low borderline
Ccor2641140315950 Steroid CPD/CYP90A1 medium borderline