PlantSME Plant secondary metabolism enzyme database

Calliergon cordifolium (calliergon_cordifolium)

Imported from atlas release summary for Calliergon cordifolium.

877
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 27.14% Terpenoid pathway 23.26% Alkaloid pathway 19.04% Flavonoid pathway 12.66% Rosmarinic acid pathway 10.72% Steroid pathway 7.18%
Family Distribution
C4H 7.16% POD 5.86% 4CL 5.51% C3'H/CYP98A 5.28% BAHD 5.19% CYP76 4.07% NMT 3.49% IFS 2.95%
Other Families 60.47%
More Families (96)
F3H 60 2.69% PAL 60 2.69% BR6OX2/CYP85A2 51 2.28% DWF4/CYP90B1 51 2.28% STR 49 2.19% F3'H/CYP75B 47 2.1% GS 45 2.01% IFR 43 1.92% T3O 41 1.84% CODM/T6ODM 39 1.75% UGT 38 1.7% PYKS 35 1.57% 7DLGT 31 1.39% IO 31 1.39% UFGT 31 1.39% CAD 30 1.34% CAS 28 1.25% H6H 27 1.21% TRI/TRII 25 1.12% T16H 25 1.12% CHS 24 1.07% CYP71 24 1.07% G8O/G8H 22 0.98% SMT1/SMT2/SMT3 22 0.98% COMT 21 0.94% F3'5'H/CYP75A 20 0.9% CSE 18 0.81% NCS 17 0.76% CYP90D1 17 0.76% CPD/CYP90A1 17 0.76% 7DLH 16 0.72% SLS 16 0.72% ANR 16 0.72% FNS 15 0.67% CCR 13 0.58% HCT 13 0.58% 8HGO 11 0.49% LAC 11 0.49% RAS 10 0.45% PMT 9 0.4% SGD 9 0.4% F5H/CYP84A 9 0.4% CYP719 8 0.36% BBE 8 0.36% CNMT 8 0.36% DWF5 8 0.36% SQS/FDFT1 8 0.36% AACT 8 0.36% TDC 7 0.31% 16OMT 7 0.31% CPR 7 0.31% LAMT 6 0.27% COR 6 0.27% TAT 6 0.27% CYP80B1 5 0.22% ADC 5 0.22% TYDC_DDC 5 0.22% MPO 5 0.22% DFR 5 0.22% ANS/LDOX 5 0.22% BR6OX1/CYP85A1 5 0.22% MVK 5 0.22% GGPPS 5 0.22% 6OMT_4OMT_SOMT 4 0.18% CHI 4 0.18% DWF1 4 0.18% CPI1 4 0.18% SQE 4 0.18% PMK 4 0.18% HDS/IspG 4 0.18% MVD 4 0.18% GES 3 0.13% FLS 3 0.13% HPPR 3 0.13% ROT3/CYP90C1 3 0.13% DET2 3 0.13% MCT/IspD 3 0.13% CMK/IspE 3 0.13% FPPS 3 0.13% XMT_MXMT_DXMT 2 0.09% CYP80F1 2 0.09% CCoAOMT 2 0.09% FK 2 0.09% DWF7 2 0.09% DXS 2 0.09% IDI 2 0.09% TPS 2 0.09% HMGS 2 0.09% ISY 1 0.04% CYP51G1 1 0.04% HYD1 1 0.04% SMO1/SMO2 1 0.04% GPPS 1 0.04% HDR/IspH 1 0.04% MDS/IspF 1 0.04% HMGR 1 0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 238 10 POD (125) View species results
Terpenoid pathway 204 18 BAHD (82) View species results
Alkaloid pathway 167 23 NMT (34) View species results
Flavonoid pathway 111 9 4CL (26) View species results
Rosmarinic acid pathway 94 7 4CL (26) View species results
Steroid pathway 63 15 CAS (25) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 846 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 139 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IFS
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Gene Pathway Family Confidence Status
Ccor1468290003730 Flavonoid IFS medium borderline
Ccor1470810003790 Flavonoid IFS medium borderline
Ccor1576950015070 Flavonoid IFS low borderline
Ccor1591670018340 Flavonoid IFS low borderline
Ccor1631610025440 Flavonoid IFS low borderline
Ccor1645700028030 Flavonoid IFS medium borderline
Ccor1791650042290 Flavonoid IFS low borderline
Ccor1792170042520 Flavonoid IFS low borderline
Ccor1795630044540 Flavonoid IFS low borderline
Ccor1814040048600 Flavonoid IFS low borderline
Ccor1817660050220 Flavonoid IFS low borderline
Ccor2109400067830 Flavonoid IFS low borderline
Ccor2120340071640 Flavonoid IFS medium borderline
Ccor2122770072270 Flavonoid IFS low borderline
Ccor2137620075740 Flavonoid IFS medium borderline
Ccor2265960081900 Flavonoid IFS low borderline
Ccor2317660092140 Flavonoid IFS low borderline
Ccor2325260097360 Flavonoid IFS low borderline
Ccor2325260097370 Flavonoid IFS low borderline
Ccor2328480099250 Flavonoid IFS low borderline
Ccor2340150104560 Flavonoid IFS medium borderline
Ccor2344060106260 Flavonoid IFS low borderline
Ccor2392900109910 Flavonoid IFS low borderline
Ccor2405320116980 Flavonoid IFS low borderline
Ccor2409440118520 Flavonoid IFS low borderline
Ccor2471900137280 Flavonoid IFS low borderline
Ccor2473040137940 Flavonoid IFS low borderline
Ccor2474890139720 Flavonoid IFS low borderline
Ccor2490660145830 Flavonoid IFS low borderline
Ccor2498790153630 Flavonoid IFS medium borderline
Ccor2500610156430 Flavonoid IFS low borderline
Ccor2500610156450 Flavonoid IFS low borderline
Ccor2522280164240 Flavonoid IFS medium borderline
Ccor2524020165910 Flavonoid IFS low borderline
Ccor2534400173120 Flavonoid IFS low borderline
Ccor2540120180220 Flavonoid IFS low borderline
Ccor2553150188490 Flavonoid IFS low borderline
Ccor2554000189650 Flavonoid IFS low borderline
Ccor2560010194530 Flavonoid IFS low borderline
Ccor2560360195130 Flavonoid IFS low borderline
Ccor2562940198460 Flavonoid IFS medium borderline
Ccor2577740212660 Flavonoid IFS medium borderline
Ccor2582780216670 Flavonoid IFS low borderline
Ccor2583560217830 Flavonoid IFS low borderline
Ccor2586420220960 Flavonoid IFS low borderline
Ccor2587720221980 Flavonoid IFS low borderline
Ccor2603370238370 Flavonoid IFS low borderline
Ccor2605180240690 Flavonoid IFS medium borderline
Ccor2608500245150 Flavonoid IFS low borderline
Ccor2609250246690 Flavonoid IFS medium borderline