PlantSME Plant secondary metabolism enzyme database

Calliergon cordifolium (calliergon_cordifolium)

Imported from atlas release summary for Calliergon cordifolium.

877
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 27.14% Terpenoid pathway 23.26% Alkaloid pathway 19.04% Flavonoid pathway 12.66% Rosmarinic acid pathway 10.72% Steroid pathway 7.18%
Family Distribution
C4H 7.16% POD 5.86% 4CL 5.51% C3'H/CYP98A 5.28% BAHD 5.19% CYP76 4.07% NMT 3.49% IFS 2.95%
Other Families 60.47%
More Families (96)
F3H 60 2.69% PAL 60 2.69% BR6OX2/CYP85A2 51 2.28% DWF4/CYP90B1 51 2.28% STR 49 2.19% F3'H/CYP75B 47 2.1% GS 45 2.01% IFR 43 1.92% T3O 41 1.84% CODM/T6ODM 39 1.75% UGT 38 1.7% PYKS 35 1.57% 7DLGT 31 1.39% IO 31 1.39% UFGT 31 1.39% CAD 30 1.34% CAS 28 1.25% H6H 27 1.21% TRI/TRII 25 1.12% T16H 25 1.12% CHS 24 1.07% CYP71 24 1.07% G8O/G8H 22 0.98% SMT1/SMT2/SMT3 22 0.98% COMT 21 0.94% F3'5'H/CYP75A 20 0.9% CSE 18 0.81% NCS 17 0.76% CYP90D1 17 0.76% CPD/CYP90A1 17 0.76% 7DLH 16 0.72% SLS 16 0.72% ANR 16 0.72% FNS 15 0.67% CCR 13 0.58% HCT 13 0.58% 8HGO 11 0.49% LAC 11 0.49% RAS 10 0.45% PMT 9 0.4% SGD 9 0.4% F5H/CYP84A 9 0.4% CYP719 8 0.36% BBE 8 0.36% CNMT 8 0.36% DWF5 8 0.36% SQS/FDFT1 8 0.36% AACT 8 0.36% TDC 7 0.31% 16OMT 7 0.31% CPR 7 0.31% LAMT 6 0.27% COR 6 0.27% TAT 6 0.27% CYP80B1 5 0.22% ADC 5 0.22% TYDC_DDC 5 0.22% MPO 5 0.22% DFR 5 0.22% ANS/LDOX 5 0.22% BR6OX1/CYP85A1 5 0.22% MVK 5 0.22% GGPPS 5 0.22% 6OMT_4OMT_SOMT 4 0.18% CHI 4 0.18% DWF1 4 0.18% CPI1 4 0.18% SQE 4 0.18% PMK 4 0.18% HDS/IspG 4 0.18% MVD 4 0.18% GES 3 0.13% FLS 3 0.13% HPPR 3 0.13% ROT3/CYP90C1 3 0.13% DET2 3 0.13% MCT/IspD 3 0.13% CMK/IspE 3 0.13% FPPS 3 0.13% XMT_MXMT_DXMT 2 0.09% CYP80F1 2 0.09% CCoAOMT 2 0.09% FK 2 0.09% DWF7 2 0.09% DXS 2 0.09% IDI 2 0.09% TPS 2 0.09% HMGS 2 0.09% ISY 1 0.04% CYP51G1 1 0.04% HYD1 1 0.04% SMO1/SMO2 1 0.04% GPPS 1 0.04% HDR/IspH 1 0.04% MDS/IspF 1 0.04% HMGR 1 0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 238 10 POD (125) View species results
Terpenoid pathway 204 18 BAHD (82) View species results
Alkaloid pathway 167 23 NMT (34) View species results
Flavonoid pathway 111 9 4CL (26) View species results
Rosmarinic acid pathway 94 7 4CL (26) View species results
Steroid pathway 63 15 CAS (25) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 846 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 139 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CSE
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Gene Pathway Family Confidence Status
Ccor1597920019480 Phenylpropanoid CSE medium pass
Ccor1942090059520 Phenylpropanoid CSE medium pass
Ccor2114060069600 Phenylpropanoid CSE medium pass
Ccor2138110075870 Phenylpropanoid CSE medium pass
Ccor2275860084890 Phenylpropanoid CSE medium pass
Ccor2286110088480 Phenylpropanoid CSE medium pass
Ccor2403930115600 Phenylpropanoid CSE low borderline
Ccor2406250117220 Phenylpropanoid CSE medium pass
Ccor2559650193880 Phenylpropanoid CSE low borderline
Ccor2565880201460 Phenylpropanoid CSE medium pass
Ccor2578220213490 Phenylpropanoid CSE low borderline
Ccor2583950218220 Phenylpropanoid CSE medium pass
Ccor2615490257010 Phenylpropanoid CSE medium pass
Ccor2619250262990 Phenylpropanoid CSE medium pass
Ccor2622030268020 Phenylpropanoid CSE medium pass
Ccor2634280294550 Phenylpropanoid CSE medium pass
Ccor2642930322240 Phenylpropanoid CSE medium pass
Ccor2644310326560 Phenylpropanoid CSE medium pass