Calliergon cordifolium (calliergon_cordifolium)
Imported from atlas release summary for Calliergon cordifolium.
877
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
877
Candidate Genes
C4H
7.16%
POD
5.86%
4CL
5.51%
C3'H/CYP98A
5.28%
BAHD
5.19%
CYP76
4.07%
NMT
3.49%
IFS
2.95%
Other Families
60.47%
More Families (96)
F3H
60
2.69%
PAL
60
2.69%
BR6OX2/CYP85A2
51
2.28%
DWF4/CYP90B1
51
2.28%
STR
49
2.19%
F3'H/CYP75B
47
2.1%
GS
45
2.01%
IFR
43
1.92%
T3O
41
1.84%
CODM/T6ODM
39
1.75%
UGT
38
1.7%
PYKS
35
1.57%
7DLGT
31
1.39%
IO
31
1.39%
UFGT
31
1.39%
CAD
30
1.34%
CAS
28
1.25%
H6H
27
1.21%
TRI/TRII
25
1.12%
T16H
25
1.12%
CHS
24
1.07%
CYP71
24
1.07%
G8O/G8H
22
0.98%
SMT1/SMT2/SMT3
22
0.98%
COMT
21
0.94%
F3'5'H/CYP75A
20
0.9%
CSE
18
0.81%
NCS
17
0.76%
CYP90D1
17
0.76%
CPD/CYP90A1
17
0.76%
7DLH
16
0.72%
SLS
16
0.72%
ANR
16
0.72%
FNS
15
0.67%
CCR
13
0.58%
HCT
13
0.58%
8HGO
11
0.49%
LAC
11
0.49%
RAS
10
0.45%
PMT
9
0.4%
SGD
9
0.4%
F5H/CYP84A
9
0.4%
CYP719
8
0.36%
BBE
8
0.36%
CNMT
8
0.36%
DWF5
8
0.36%
SQS/FDFT1
8
0.36%
AACT
8
0.36%
TDC
7
0.31%
16OMT
7
0.31%
CPR
7
0.31%
LAMT
6
0.27%
COR
6
0.27%
TAT
6
0.27%
CYP80B1
5
0.22%
ADC
5
0.22%
TYDC_DDC
5
0.22%
MPO
5
0.22%
DFR
5
0.22%
ANS/LDOX
5
0.22%
BR6OX1/CYP85A1
5
0.22%
MVK
5
0.22%
GGPPS
5
0.22%
6OMT_4OMT_SOMT
4
0.18%
CHI
4
0.18%
DWF1
4
0.18%
CPI1
4
0.18%
SQE
4
0.18%
PMK
4
0.18%
HDS/IspG
4
0.18%
MVD
4
0.18%
GES
3
0.13%
FLS
3
0.13%
HPPR
3
0.13%
ROT3/CYP90C1
3
0.13%
DET2
3
0.13%
MCT/IspD
3
0.13%
CMK/IspE
3
0.13%
FPPS
3
0.13%
XMT_MXMT_DXMT
2
0.09%
CYP80F1
2
0.09%
CCoAOMT
2
0.09%
FK
2
0.09%
DWF7
2
0.09%
DXS
2
0.09%
IDI
2
0.09%
TPS
2
0.09%
HMGS
2
0.09%
ISY
1
0.04%
CYP51G1
1
0.04%
HYD1
1
0.04%
SMO1/SMO2
1
0.04%
GPPS
1
0.04%
HDR/IspH
1
0.04%
MDS/IspF
1
0.04%
HMGR
1
0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 238 | 10 | POD (125) | View species results |
| Terpenoid pathway | 204 | 18 | BAHD (82) | View species results |
| Alkaloid pathway | 167 | 23 | NMT (34) | View species results |
| Flavonoid pathway | 111 | 9 | 4CL (26) | View species results |
| Rosmarinic acid pathway | 94 | 7 | 4CL (26) | View species results |
| Steroid pathway | 63 | 15 | CAS (25) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 846 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 139 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Ccor1575540014610 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Ccor1776940036000 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccor1776940036010 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccor1777030036060 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccor1797880045480 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Ccor1837720053200 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccor2068000066570 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccor2284330087620 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Ccor2346720107270 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccor2417430123530 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccor2464630131980 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccor2469210134650 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccor2471580136810 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccor2491540146720 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccor2494110149020 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccor2497360152830 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccor2519430162140 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccor2522540164420 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccor2523840165610 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccor2550160185310 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccor2563170199170 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccor2563780200220 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Ccor2566800201730 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccor2571010204720 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccor2572710206460 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccor2573850206980 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccor2577730212650 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccor2587400221940 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccor2588330223010 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Ccor2590400224860 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccor2592400227000 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccor2603020237920 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Ccor2610540248750 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Ccor2613680253630 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccor2626340275730 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccor2627140277160 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccor2627890278340 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Ccor2632580289540 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccor2641140315960 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccor2642520320690 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccor2642680321220 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccor2643580324340 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccor2643670324700 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccor2645000329470 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccor2645380330540 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccor2647090335170 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccor2647620335910 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccor2665660339600 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccor2665690339640 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |