PlantSME Plant secondary metabolism enzyme database

Calliergon cordifolium (calliergon_cordifolium)

Imported from atlas release summary for Calliergon cordifolium.

877
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 27.14% Terpenoid pathway 23.26% Alkaloid pathway 19.04% Flavonoid pathway 12.66% Rosmarinic acid pathway 10.72% Steroid pathway 7.18%
Family Distribution
C4H 7.16% POD 5.86% 4CL 5.51% C3'H/CYP98A 5.28% BAHD 5.19% CYP76 4.07% NMT 3.49% IFS 2.95%
Other Families 60.47%
More Families (96)
F3H 60 2.69% PAL 60 2.69% BR6OX2/CYP85A2 51 2.28% DWF4/CYP90B1 51 2.28% STR 49 2.19% F3'H/CYP75B 47 2.1% GS 45 2.01% IFR 43 1.92% T3O 41 1.84% CODM/T6ODM 39 1.75% UGT 38 1.7% PYKS 35 1.57% 7DLGT 31 1.39% IO 31 1.39% UFGT 31 1.39% CAD 30 1.34% CAS 28 1.25% H6H 27 1.21% TRI/TRII 25 1.12% T16H 25 1.12% CHS 24 1.07% CYP71 24 1.07% G8O/G8H 22 0.98% SMT1/SMT2/SMT3 22 0.98% COMT 21 0.94% F3'5'H/CYP75A 20 0.9% CSE 18 0.81% NCS 17 0.76% CYP90D1 17 0.76% CPD/CYP90A1 17 0.76% 7DLH 16 0.72% SLS 16 0.72% ANR 16 0.72% FNS 15 0.67% CCR 13 0.58% HCT 13 0.58% 8HGO 11 0.49% LAC 11 0.49% RAS 10 0.45% PMT 9 0.4% SGD 9 0.4% F5H/CYP84A 9 0.4% CYP719 8 0.36% BBE 8 0.36% CNMT 8 0.36% DWF5 8 0.36% SQS/FDFT1 8 0.36% AACT 8 0.36% TDC 7 0.31% 16OMT 7 0.31% CPR 7 0.31% LAMT 6 0.27% COR 6 0.27% TAT 6 0.27% CYP80B1 5 0.22% ADC 5 0.22% TYDC_DDC 5 0.22% MPO 5 0.22% DFR 5 0.22% ANS/LDOX 5 0.22% BR6OX1/CYP85A1 5 0.22% MVK 5 0.22% GGPPS 5 0.22% 6OMT_4OMT_SOMT 4 0.18% CHI 4 0.18% DWF1 4 0.18% CPI1 4 0.18% SQE 4 0.18% PMK 4 0.18% HDS/IspG 4 0.18% MVD 4 0.18% GES 3 0.13% FLS 3 0.13% HPPR 3 0.13% ROT3/CYP90C1 3 0.13% DET2 3 0.13% MCT/IspD 3 0.13% CMK/IspE 3 0.13% FPPS 3 0.13% XMT_MXMT_DXMT 2 0.09% CYP80F1 2 0.09% CCoAOMT 2 0.09% FK 2 0.09% DWF7 2 0.09% DXS 2 0.09% IDI 2 0.09% TPS 2 0.09% HMGS 2 0.09% ISY 1 0.04% CYP51G1 1 0.04% HYD1 1 0.04% SMO1/SMO2 1 0.04% GPPS 1 0.04% HDR/IspH 1 0.04% MDS/IspF 1 0.04% HMGR 1 0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 238 10 POD (125) View species results
Terpenoid pathway 204 18 BAHD (82) View species results
Alkaloid pathway 167 23 NMT (34) View species results
Flavonoid pathway 111 9 4CL (26) View species results
Rosmarinic acid pathway 94 7 4CL (26) View species results
Steroid pathway 63 15 CAS (25) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 846 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 139 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NCS
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Gene Pathway Family Confidence Status Best Target
Ccor1574190014200 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Ccor1803320046700 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Ccor2110440068550 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Ccor2338260103140 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Ccor2490500145700 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Ccor2494380149570 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Ccor2500170155620 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Ccor2524010165860 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Ccor2576980211170 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Ccor2617060259300 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Ccor2617670260250 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Ccor2619010262550 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Ccor2620070264380 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Ccor2626580276100 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Ccor2631070285470 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Ccor2637610305450 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Ccor2645930332180 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA