PlantSME Plant secondary metabolism enzyme database

Calliergon cordifolium (calliergon_cordifolium)

Imported from atlas release summary for Calliergon cordifolium.

877
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 27.14% Terpenoid pathway 23.26% Alkaloid pathway 19.04% Flavonoid pathway 12.66% Rosmarinic acid pathway 10.72% Steroid pathway 7.18%
Family Distribution
C4H 7.16% POD 5.86% 4CL 5.51% C3'H/CYP98A 5.28% BAHD 5.19% CYP76 4.07% NMT 3.49% IFS 2.95%
Other Families 60.47%
More Families (96)
F3H 60 2.69% PAL 60 2.69% BR6OX2/CYP85A2 51 2.28% DWF4/CYP90B1 51 2.28% STR 49 2.19% F3'H/CYP75B 47 2.1% GS 45 2.01% IFR 43 1.92% T3O 41 1.84% CODM/T6ODM 39 1.75% UGT 38 1.7% PYKS 35 1.57% 7DLGT 31 1.39% IO 31 1.39% UFGT 31 1.39% CAD 30 1.34% CAS 28 1.25% H6H 27 1.21% TRI/TRII 25 1.12% T16H 25 1.12% CHS 24 1.07% CYP71 24 1.07% G8O/G8H 22 0.98% SMT1/SMT2/SMT3 22 0.98% COMT 21 0.94% F3'5'H/CYP75A 20 0.9% CSE 18 0.81% NCS 17 0.76% CYP90D1 17 0.76% CPD/CYP90A1 17 0.76% 7DLH 16 0.72% SLS 16 0.72% ANR 16 0.72% FNS 15 0.67% CCR 13 0.58% HCT 13 0.58% 8HGO 11 0.49% LAC 11 0.49% RAS 10 0.45% PMT 9 0.4% SGD 9 0.4% F5H/CYP84A 9 0.4% CYP719 8 0.36% BBE 8 0.36% CNMT 8 0.36% DWF5 8 0.36% SQS/FDFT1 8 0.36% AACT 8 0.36% TDC 7 0.31% 16OMT 7 0.31% CPR 7 0.31% LAMT 6 0.27% COR 6 0.27% TAT 6 0.27% CYP80B1 5 0.22% ADC 5 0.22% TYDC_DDC 5 0.22% MPO 5 0.22% DFR 5 0.22% ANS/LDOX 5 0.22% BR6OX1/CYP85A1 5 0.22% MVK 5 0.22% GGPPS 5 0.22% 6OMT_4OMT_SOMT 4 0.18% CHI 4 0.18% DWF1 4 0.18% CPI1 4 0.18% SQE 4 0.18% PMK 4 0.18% HDS/IspG 4 0.18% MVD 4 0.18% GES 3 0.13% FLS 3 0.13% HPPR 3 0.13% ROT3/CYP90C1 3 0.13% DET2 3 0.13% MCT/IspD 3 0.13% CMK/IspE 3 0.13% FPPS 3 0.13% XMT_MXMT_DXMT 2 0.09% CYP80F1 2 0.09% CCoAOMT 2 0.09% FK 2 0.09% DWF7 2 0.09% DXS 2 0.09% IDI 2 0.09% TPS 2 0.09% HMGS 2 0.09% ISY 1 0.04% CYP51G1 1 0.04% HYD1 1 0.04% SMO1/SMO2 1 0.04% GPPS 1 0.04% HDR/IspH 1 0.04% MDS/IspF 1 0.04% HMGR 1 0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 238 10 POD (125) View species results
Terpenoid pathway 204 18 BAHD (82) View species results
Alkaloid pathway 167 23 NMT (34) View species results
Flavonoid pathway 111 9 4CL (26) View species results
Rosmarinic acid pathway 94 7 4CL (26) View species results
Steroid pathway 63 15 CAS (25) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 846 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 139 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PAL
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Gene Pathway Family Confidence Status Best Target
Ccor1639410026730 Flavonoid PAL medium pass PAL__00008__sp_Q8VXG7_PALY_MAIZE
Ccor1782770040130 Flavonoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
Ccor1816020049460 Flavonoid PAL medium pass PAL__00001__sp_P24481_PAL1_PETCR
Ccor2287010088950 Flavonoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
Ccor2336270101990 Flavonoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
Ccor2395790111570 Flavonoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
Ccor2490240145520 Flavonoid PAL medium pass PAL__00008__sp_Q8VXG7_PALY_MAIZE
Ccor2555180190430 Flavonoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
Ccor2573940207130 Flavonoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
Ccor2583290217570 Flavonoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
Ccor2583290217580 Flavonoid PAL medium pass PAL__00002__sp_P35510_PAL1_ARATH
Ccor2609240246660 Flavonoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
Ccor2624800272830 Flavonoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
Ccor2633210291380 Flavonoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
Ccor2633210291400 Flavonoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
Ccor2640240312920 Flavonoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
Ccor2643560324210 Flavonoid PAL high pass PAL__00002__sp_P35510_PAL1_ARATH
Ccor2646760334590 Flavonoid PAL high pass PAL__00003__sp_P45724_PAL2_ARATH
Ccor2647820336330 Flavonoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
Ccor2647820336340 Flavonoid PAL medium pass PAL__00009__sp_Q9SS45_PAL4_ARATH
Ccor1639410026730 Phenylpropanoid PAL medium pass PAL__00008__sp_Q8VXG7_PALY_MAIZE
Ccor1782770040130 Phenylpropanoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
Ccor1816020049460 Phenylpropanoid PAL medium pass PAL__00001__sp_P24481_PAL1_PETCR
Ccor2287010088950 Phenylpropanoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
Ccor2336270101990 Phenylpropanoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
Ccor2395790111570 Phenylpropanoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
Ccor2490240145520 Phenylpropanoid PAL medium pass PAL__00008__sp_Q8VXG7_PALY_MAIZE
Ccor2555180190430 Phenylpropanoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
Ccor2573940207130 Phenylpropanoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
Ccor2583290217570 Phenylpropanoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
Ccor2583290217580 Phenylpropanoid PAL medium pass PAL__00002__sp_P35510_PAL1_ARATH
Ccor2609240246660 Phenylpropanoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
Ccor2624800272830 Phenylpropanoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
Ccor2633210291380 Phenylpropanoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
Ccor2633210291400 Phenylpropanoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
Ccor2640240312920 Phenylpropanoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
Ccor2643560324210 Phenylpropanoid PAL high pass PAL__00002__sp_P35510_PAL1_ARATH
Ccor2646760334590 Phenylpropanoid PAL high pass PAL__00003__sp_P45724_PAL2_ARATH
Ccor2647820336330 Phenylpropanoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
Ccor2647820336340 Phenylpropanoid PAL medium pass PAL__00009__sp_Q9SS45_PAL4_ARATH
Ccor1639410026730 Rosmarinic Acid PAL medium pass PAL__00008__sp_Q8VXG7_PALY_MAIZE
Ccor1782770040130 Rosmarinic Acid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
Ccor1816020049460 Rosmarinic Acid PAL medium pass PAL__00001__sp_P24481_PAL1_PETCR
Ccor2287010088950 Rosmarinic Acid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
Ccor2336270101990 Rosmarinic Acid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
Ccor2395790111570 Rosmarinic Acid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
Ccor2490240145520 Rosmarinic Acid PAL medium pass PAL__00008__sp_Q8VXG7_PALY_MAIZE
Ccor2555180190430 Rosmarinic Acid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
Ccor2573940207130 Rosmarinic Acid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
Ccor2583290217570 Rosmarinic Acid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR