PlantSME Plant secondary metabolism enzyme database

Calliergon cordifolium (calliergon_cordifolium)

Imported from atlas release summary for Calliergon cordifolium.

1206
Candidate Protein Records
877
Pathway-Level Records
2234
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Phenylpropanoid pathway 27.14% Terpenoid pathway 23.26% Alkaloid pathway 19.04% Flavonoid pathway 12.66% Rosmarinic acid pathway 10.72% Steroid pathway 7.18%
Family Distribution
C4H 7.16% POD 5.86% 4CL 5.51% C3'H/CYP98A 5.28% BAHD 5.19% CYP76 4.07% NMT 3.49% IFS 2.95%
Other Families 60.47%
More Families (96)
F3H 60 2.69% PAL 60 2.69% BR6OX2/CYP85A2 51 2.28% DWF4/CYP90B1 51 2.28% STR 49 2.19% F3'H/CYP75B 47 2.1% GS 45 2.01% IFR 43 1.92% T3O 41 1.84% CODM/T6ODM 39 1.75% UGT 38 1.7% PYKS 35 1.57% 7DLGT 31 1.39% IO 31 1.39% UFGT 31 1.39% CAD 30 1.34% CAS 28 1.25% H6H 27 1.21% TRI/TRII 25 1.12% T16H 25 1.12% CHS 24 1.07% CYP71 24 1.07% G8O/G8H 22 0.98% SMT1/SMT2/SMT3 22 0.98% COMT 21 0.94% F3'5'H/CYP75A 20 0.9% CSE 18 0.81% NCS 17 0.76% CYP90D1 17 0.76% CPD/CYP90A1 17 0.76% 7DLH 16 0.72% SLS 16 0.72% ANR 16 0.72% FNS 15 0.67% CCR 13 0.58% HCT 13 0.58% 8HGO 11 0.49% LAC 11 0.49% RAS 10 0.45% PMT 9 0.4% SGD 9 0.4% F5H/CYP84A 9 0.4% CYP719 8 0.36% BBE 8 0.36% CNMT 8 0.36% DWF5 8 0.36% SQS/FDFT1 8 0.36% AACT 8 0.36% TDC 7 0.31% 16OMT 7 0.31% CPR 7 0.31% LAMT 6 0.27% COR 6 0.27% TAT 6 0.27% CYP80B1 5 0.22% ADC 5 0.22% TYDC_DDC 5 0.22% MPO 5 0.22% DFR 5 0.22% ANS/LDOX 5 0.22% BR6OX1/CYP85A1 5 0.22% MVK 5 0.22% GGPPS 5 0.22% 6OMT_4OMT_SOMT 4 0.18% CHI 4 0.18% DWF1 4 0.18% CPI1 4 0.18% SQE 4 0.18% PMK 4 0.18% HDS/IspG 4 0.18% MVD 4 0.18% GES 3 0.13% FLS 3 0.13% HPPR 3 0.13% ROT3/CYP90C1 3 0.13% DET2 3 0.13% MCT/IspD 3 0.13% CMK/IspE 3 0.13% FPPS 3 0.13% XMT_MXMT_DXMT 2 0.09% CYP80F1 2 0.09% CCoAOMT 2 0.09% FK 2 0.09% DWF7 2 0.09% DXS 2 0.09% IDI 2 0.09% TPS 2 0.09% HMGS 2 0.09% ISY 1 0.04% CYP51G1 1 0.04% HYD1 1 0.04% SMO1/SMO2 1 0.04% GPPS 1 0.04% HDR/IspH 1 0.04% MDS/IspF 1 0.04% HMGR 1 0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Phenylpropanoid pathway 238 10 POD (125) View species results
Terpenoid pathway 204 18 BAHD (82) View species results
Alkaloid pathway 167 23 NMT (34) View species results
Flavonoid pathway 111 9 4CL (26) View species results
Rosmarinic acid pathway 94 7 4CL (26) View species results
Steroid pathway 63 15 CAS (25) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 846 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 139 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
Reset
Protein/Isoform Record Pathway Family Confidence Status
Ccor2636350301180 Alkaloid TRI/TRII medium pass
Ccor2491790147000 Alkaloid TYDC_DDC medium borderline
Ccor2498600153460 Alkaloid TYDC_DDC medium borderline
Ccor2576770210620 Alkaloid TYDC_DDC medium borderline
Ccor2637770305900 Alkaloid TYDC_DDC medium borderline
Ccor780346110 Alkaloid TYDC_DDC low borderline
Ccor2125480073130 Alkaloid XMT_MXMT_DXMT low borderline
Ccor2131210074580 Alkaloid XMT_MXMT_DXMT medium borderline