PlantSME Plant secondary metabolism enzyme database

Carex scoparia (carex_scoparia)

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Imported from atlas release summary for Carex scoparia.

1287
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 364 12 POD (188) View species results
Terpenoid pathway 362 21 BAHD (148) View species results
Alkaloid pathway 253 24 NMT (33) View species results
Flavonoid pathway 127 11 UFGT (49) View species results
Steroid pathway 91 12 CAS (42) View species results
Rosmarinic acid pathway 90 7 4CL (32) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1019 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 252 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Gene Pathway Family Confidence Status
Csco01g07730.1 Flavonoid 4CL medium pass
Csco01g09980.1 Flavonoid 4CL medium pass
Csco01g09990.1 Flavonoid 4CL medium pass
Csco01g10000.1 Flavonoid 4CL medium pass
Csco01g10010.1 Flavonoid 4CL medium pass
Csco02g04800.1 Flavonoid 4CL medium pass
Csco03g00900.1 Flavonoid 4CL low borderline
Csco05g05300.1 Flavonoid 4CL low borderline
Csco06g03780.1 Flavonoid 4CL low borderline
Csco07g10520.1 Flavonoid 4CL medium pass
Csco07g10650.1 Flavonoid 4CL medium pass
Csco08g07770.1 Flavonoid 4CL medium pass
Csco08g09260.1 Flavonoid 4CL medium pass
Csco09g03610.1 Flavonoid 4CL medium pass
Csco09g03620.1 Flavonoid 4CL medium pass
Csco09g03630.1 Flavonoid 4CL medium pass
Csco09g03640.1 Flavonoid 4CL medium pass
Csco09g03850.1 Flavonoid 4CL medium pass
Csco11g02160.1 Flavonoid 4CL medium pass
Csco13g05780.1 Flavonoid 4CL medium pass
Csco14g01270.1 Flavonoid 4CL medium pass
Csco14g01550.1 Flavonoid 4CL low borderline
Csco14g02260.1 Flavonoid 4CL medium pass
Csco16g01030.1 Flavonoid 4CL medium pass
Csco16g05860.1 Flavonoid 4CL medium pass
Csco16g06290.1 Flavonoid 4CL low borderline
Csco17g00420.1 Flavonoid 4CL low borderline
Csco17g00470.1 Flavonoid 4CL low borderline
Csco17g02870.1 Flavonoid 4CL low borderline
Csco17g06180.1 Flavonoid 4CL low borderline
Csco21g01260.1 Flavonoid 4CL medium pass
Csco23g03830.1 Flavonoid 4CL medium pass
Csco23g03840.1 Flavonoid 4CL medium pass
Csco24g00930.1 Flavonoid 4CL low borderline
Csco26g02570.1 Flavonoid 4CL low borderline
Csco26g04790.1 Flavonoid 4CL low borderline
Csco27g07330.1 Flavonoid 4CL medium pass
Csco28g01300.1 Flavonoid 4CL medium pass
Csco28g01310.1 Flavonoid 4CL medium pass
Csco30g02130.1 Flavonoid 4CL medium pass
Csco30g02140.1 Flavonoid 4CL medium pass
Csco30g02850.1 Flavonoid 4CL low borderline
Csco30g05150.1 Flavonoid 4CL medium pass
Csco31g02030.1 Flavonoid 4CL medium pass
Csco31g02040.1 Flavonoid 4CL medium pass
Csco01g08640.1 Flavonoid ANR low borderline
Csco02g00290.1 Flavonoid ANR medium borderline
Csco03g04720.1 Flavonoid ANR medium borderline
Csco04g04280.1 Flavonoid ANR medium borderline
Csco05g09220.1 Flavonoid ANR medium borderline