PlantSME Plant secondary metabolism enzyme database

Carex scoparia (carex_scoparia)

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Imported from atlas release summary for Carex scoparia.

1287
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 364 12 POD (188) View species results
Terpenoid pathway 362 21 BAHD (148) View species results
Alkaloid pathway 253 24 NMT (33) View species results
Flavonoid pathway 127 11 UFGT (49) View species results
Steroid pathway 91 12 CAS (42) View species results
Rosmarinic acid pathway 90 7 4CL (32) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1019 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 252 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Gene Pathway Family Confidence Status
Csco05g09230.1 Flavonoid ANR medium borderline
Csco05g09240.1 Flavonoid ANR medium borderline
Csco05g09250.1 Flavonoid ANR medium borderline
Csco05g09260.1 Flavonoid ANR medium borderline
Csco05g09270.1 Flavonoid ANR medium borderline
Csco07g00640.1 Flavonoid ANR medium borderline
Csco07g04760.1 Flavonoid ANR medium borderline
Csco08g07440.1 Flavonoid ANR low borderline
Csco09g00980.1 Flavonoid ANR medium borderline
Csco09g01010.1 Flavonoid ANR medium borderline
Csco09g02520.1 Flavonoid ANR medium borderline
Csco13g00560.1 Flavonoid ANR medium borderline
Csco14g01740.1 Flavonoid ANR low borderline
Csco14g01750.1 Flavonoid ANR medium borderline
Csco15g01560.1 Flavonoid ANR medium borderline
Csco17g06240.1 Flavonoid ANR low borderline
Csco18g03950.1 Flavonoid ANR medium borderline
Csco21g00590.1 Flavonoid ANR medium borderline
Csco26g03510.1 Flavonoid ANR low borderline
Csco26g05140.1 Flavonoid ANR medium borderline
Csco30g04470.1 Flavonoid ANR medium borderline
Csco30g04480.1 Flavonoid ANR medium borderline
Csco02g00260.1 Flavonoid ANS/LDOX low borderline
Csco02g05330.1 Flavonoid ANS/LDOX medium borderline
Csco03g06010.1 Flavonoid ANS/LDOX medium borderline
Csco07g06460.1 Flavonoid ANS/LDOX medium pass
Csco15g00330.1 Flavonoid ANS/LDOX low borderline
Csco19g04830.1 Flavonoid ANS/LDOX medium borderline
Csco22g00110.1 Flavonoid ANS/LDOX medium borderline
Csco22g00210.1 Flavonoid ANS/LDOX medium pass
Csco23g02370.1 Flavonoid ANS/LDOX medium borderline
Csco25g05730.1 Flavonoid ANS/LDOX medium borderline
Csco32g01850.1 Flavonoid ANS/LDOX medium borderline
Csco01g04740.1 Flavonoid C4H low borderline
Csco01g06190.1 Flavonoid C4H medium pass
Csco01g07530.1 Flavonoid C4H medium pass
Csco02g00170.1 Flavonoid C4H low borderline
Csco02g01530.1 Flavonoid C4H low borderline
Csco06g03000.1 Flavonoid C4H low borderline
Csco06g08790.1 Flavonoid C4H low borderline
Csco09g05660.1 Flavonoid C4H low borderline
Csco09g05680.1 Flavonoid C4H low borderline
Csco10g03360.1 Flavonoid C4H low borderline
Csco10g04680.1 Flavonoid C4H low borderline
Csco10g04690.1 Flavonoid C4H low borderline
Csco10g05800.1 Flavonoid C4H medium borderline
Csco10g05820.1 Flavonoid C4H medium borderline
Csco11g05630.1 Flavonoid C4H low borderline
Csco13g03410.1 Flavonoid C4H low borderline
Csco14g02840.1 Flavonoid C4H low borderline