PlantSME Plant secondary metabolism enzyme database

Carex scoparia (carex_scoparia)

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Imported from atlas release summary for Carex scoparia.

1634
Candidate Protein Records
1287
Pathway-Level Records
3083
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Phenylpropanoid pathway 364 12 POD (188) View species results
Terpenoid pathway 362 21 BAHD (148) View species results
Alkaloid pathway 253 24 NMT (33) View species results
Flavonoid pathway 127 11 UFGT (49) View species results
Steroid pathway 91 12 CAS (42) View species results
Rosmarinic acid pathway 90 7 4CL (32) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1019 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 252 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Csco05g06200.1 Flavonoid F3H low borderline
Csco05g06210.1 Flavonoid F3H medium borderline
Csco05g06290.1 Flavonoid F3H medium borderline
Csco05g06870.1 Flavonoid F3H medium borderline
Csco05g10380.1 Flavonoid F3H medium borderline
Csco05g10390.1 Flavonoid F3H medium borderline
Csco06g00010.1 Flavonoid F3H medium borderline
Csco06g05430.1 Flavonoid F3H medium borderline
Csco06g07680.1 Flavonoid F3H medium borderline
Csco07g00360.1 Flavonoid F3H medium pass
Csco07g03690.1 Flavonoid F3H low borderline
Csco07g04650.1 Flavonoid F3H medium borderline
Csco07g06440.1 Flavonoid F3H medium borderline
Csco07g06510.1 Flavonoid F3H medium borderline
Csco07g07430.1 Flavonoid F3H low borderline
Csco07g07440.1 Flavonoid F3H medium borderline
Csco08g01200.1 Flavonoid F3H medium borderline
Csco08g01460.1 Flavonoid F3H medium pass
Csco08g01470.1 Flavonoid F3H low borderline
Csco08g01650.1 Flavonoid F3H medium borderline
Csco08g09830.1 Flavonoid F3H medium borderline
Csco09g07020.1 Flavonoid F3H medium borderline
Csco10g01430.1 Flavonoid F3H medium borderline
Csco10g01710.1 Flavonoid F3H medium borderline
Csco10g05950.1 Flavonoid F3H medium borderline
Csco10g07040.1 Flavonoid F3H medium borderline
Csco10g07050.1 Flavonoid F3H medium borderline
Csco10g07400.1 Flavonoid F3H medium borderline
Csco11g00760.1 Flavonoid F3H medium borderline
Csco11g00930.1 Flavonoid F3H medium borderline
Csco11g00960.1 Flavonoid F3H medium borderline
Csco11g01000.1 Flavonoid F3H medium borderline
Csco11g01010.1 Flavonoid F3H medium borderline
Csco11g01040.1 Flavonoid F3H medium borderline
Csco11g01090.1 Flavonoid F3H medium pass
Csco12g02620.1 Flavonoid F3H medium borderline
Csco12g05350.1 Flavonoid F3H medium borderline
Csco12g05360.1 Flavonoid F3H medium borderline
Csco12g07070.1 Flavonoid F3H medium borderline
Csco12g07090.1 Flavonoid F3H medium borderline
Csco12g07100.1 Flavonoid F3H medium borderline
Csco15g00940.1 Flavonoid F3H medium borderline
Csco15g01700.1 Flavonoid F3H medium borderline
Csco15g01870.1 Flavonoid F3H medium borderline
Csco15g08450.1 Flavonoid F3H medium borderline
Csco17g00320.1 Flavonoid F3H low borderline
Csco17g01570.1 Flavonoid F3H medium borderline
Csco17g06820.1 Flavonoid F3H medium borderline
Csco18g00730.1 Flavonoid F3H medium borderline
Csco19g02190.1 Flavonoid F3H medium borderline