PlantSME Plant secondary metabolism enzyme database

Carex scoparia (carex_scoparia)

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Imported from atlas release summary for Carex scoparia.

1634
Candidate Protein Records
1287
Pathway-Level Records
3083
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Phenylpropanoid pathway 364 12 POD (188) View species results
Terpenoid pathway 362 21 BAHD (148) View species results
Alkaloid pathway 253 24 NMT (33) View species results
Flavonoid pathway 127 11 UFGT (49) View species results
Steroid pathway 91 12 CAS (42) View species results
Rosmarinic acid pathway 90 7 4CL (32) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1019 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 252 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Csco19g02230.1 Flavonoid F3H medium borderline
Csco19g02250.1 Flavonoid F3H medium borderline
Csco19g02280.1 Flavonoid F3H medium borderline
Csco19g02290.1 Flavonoid F3H medium borderline
Csco19g03310.1 Flavonoid F3H medium pass
Csco19g05750.1 Flavonoid F3H low borderline
Csco20g05230.1 Flavonoid F3H medium borderline
Csco20g05240.1 Flavonoid F3H medium borderline
Csco20g05250.1 Flavonoid F3H medium borderline
Csco21g01370.1 Flavonoid F3H medium borderline
Csco21g01380.1 Flavonoid F3H medium borderline
Csco21g06950.1 Flavonoid F3H medium borderline
Csco22g00200.1 Flavonoid F3H medium borderline
Csco22g06110.1 Flavonoid F3H medium borderline
Csco23g00850.1 Flavonoid F3H medium borderline
Csco23g02380.1 Flavonoid F3H medium borderline
Csco24g01130.1 Flavonoid F3H medium borderline
Csco24g01560.1 Flavonoid F3H medium borderline
Csco26g01860.1 Flavonoid F3H medium borderline
Csco27g03550.1 Flavonoid F3H medium borderline
Csco28g03700.1 Flavonoid F3H medium borderline
Csco28g03710.1 Flavonoid F3H medium borderline
Csco28g05250.1 Flavonoid F3H low borderline
Csco28g05760.1 Flavonoid F3H medium borderline
Csco28g05770.1 Flavonoid F3H medium borderline
Csco29g01150.1 Flavonoid F3H medium borderline
Csco29g03770.1 Flavonoid F3H medium borderline
Csco29g04670.1 Flavonoid F3H medium borderline
Csco33g01010.1 Flavonoid F3H medium borderline
Csco11g00940.1 Flavonoid FLS medium borderline
Csco30g05780.1 Flavonoid FLS low borderline
Csco01g07960.1 Flavonoid FNS medium borderline
Csco01g09100.1 Flavonoid FNS medium borderline
Csco01g09110.1 Flavonoid FNS medium pass
Csco01g09120.1 Flavonoid FNS medium borderline
Csco02g01510.1 Flavonoid FNS medium borderline
Csco02g03910.1 Flavonoid FNS medium borderline
Csco02g05460.1 Flavonoid FNS medium borderline
Csco03g05560.1 Flavonoid FNS medium borderline
Csco05g03000.1 Flavonoid FNS medium borderline
Csco07g06450.1 Flavonoid FNS low borderline
Csco08g02500.1 Flavonoid FNS low borderline
Csco09g05310.1 Flavonoid FNS medium borderline
Csco11g06950.1 Flavonoid FNS medium borderline
Csco13g02080.1 Flavonoid FNS low borderline
Csco13g02630.1 Flavonoid FNS medium borderline
Csco14g02920.1 Flavonoid FNS medium borderline
Csco14g02960.1 Flavonoid FNS medium borderline
Csco14g02980.1 Flavonoid FNS medium borderline
Csco15g03130.1 Flavonoid FNS medium borderline