PlantSME Plant secondary metabolism enzyme database

Carex scoparia (carex_scoparia)

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Imported from atlas release summary for Carex scoparia.

1634
Candidate Protein Records
1287
Pathway-Level Records
3083
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Phenylpropanoid pathway 364 12 POD (188) View species results
Terpenoid pathway 362 21 BAHD (148) View species results
Alkaloid pathway 253 24 NMT (33) View species results
Flavonoid pathway 127 11 UFGT (49) View species results
Steroid pathway 91 12 CAS (42) View species results
Rosmarinic acid pathway 90 7 4CL (32) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1019 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 252 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Csco30g05770.1 Terpenoid BAHD medium pass
Csco30g06210.1 Terpenoid BAHD medium pass
Csco31g00470.1 Terpenoid BAHD low borderline
Csco31g04960.1 Terpenoid BAHD medium pass
Csco32g00550.1 Terpenoid BAHD low borderline
Csco32g02330.1 Terpenoid BAHD low borderline
Csco33g00420.1 Terpenoid BAHD medium pass
Csco05g08860.1 Terpenoid CMK/IspE high pass
Csco20g00280.1 Terpenoid CMK/IspE low borderline
Csco22g01560.1 Terpenoid CMK/IspE low borderline
Csco23g01410.1 Terpenoid CMK/IspE low borderline
Csco02g01190.1 Terpenoid CYP71 medium borderline
Csco02g01540.1 Terpenoid CYP71 medium borderline
Csco02g02080.1 Terpenoid CYP71 medium borderline
Csco03g08310.1 Terpenoid CYP71 medium pass
Csco07g03590.1 Terpenoid CYP71 low borderline
Csco09g02710.1 Terpenoid CYP71 medium pass
Csco09g05660.1 Terpenoid CYP71 low borderline
Csco09g05680.1 Terpenoid CYP71 medium pass
Csco09g05710.1 Terpenoid CYP71 medium borderline
Csco09g07200.1 Terpenoid CYP71 low borderline
Csco10g03370.1 Terpenoid CYP71 medium pass
Csco10g03380.1 Terpenoid CYP71 medium borderline
Csco10g04680.1 Terpenoid CYP71 medium borderline
Csco10g04690.1 Terpenoid CYP71 low borderline
Csco10g06590.1 Terpenoid CYP71 medium pass
Csco11g04190.1 Terpenoid CYP71 low borderline
Csco13g03410.1 Terpenoid CYP71 low borderline
Csco13g03830.1 Terpenoid CYP71 medium borderline
Csco13g03880.1 Terpenoid CYP71 medium borderline
Csco13g03900.1 Terpenoid CYP71 medium pass
Csco13g03910.1 Terpenoid CYP71 medium borderline
Csco13g03930.1 Terpenoid CYP71 medium borderline
Csco14g02970.1 Terpenoid CYP71 medium borderline
Csco15g02970.1 Terpenoid CYP71 medium borderline
Csco15g03340.1 Terpenoid CYP71 medium pass
Csco15g03350.1 Terpenoid CYP71 medium pass
Csco15g03480.1 Terpenoid CYP71 low borderline
Csco18g01420.1 Terpenoid CYP71 medium borderline
Csco20g02000.1 Terpenoid CYP71 low borderline
Csco21g01030.1 Terpenoid CYP71 medium pass
Csco21g06310.1 Terpenoid CYP71 medium pass
Csco22g05150.1 Terpenoid CYP71 medium pass
Csco22g05160.1 Terpenoid CYP71 medium borderline
Csco22g05170.1 Terpenoid CYP71 medium pass
Csco22g05180.1 Terpenoid CYP71 low borderline
Csco24g05530.1 Terpenoid CYP71 medium borderline
Csco24g05540.1 Terpenoid CYP71 medium borderline
Csco25g04770.1 Terpenoid CYP71 medium pass
Csco26g01540.1 Terpenoid CYP71 low borderline