PlantSME Plant secondary metabolism enzyme database

Citrus ichangensis (citrus_ichangensis)

Imported from atlas release summary for Citrus ichangensis.

1849
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 490 19 BAHD (197) View species results
Alkaloid pathway 460 26 NMT (81) View species results
Phenylpropanoid pathway 410 12 POD (165) View species results
Rosmarinic acid pathway 189 7 C4H (105) View species results
Flavonoid pathway 168 13 UFGT (42) View species results
Steroid pathway 132 15 CAS (56) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2488 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 277 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Gene Pathway Family Confidence Status
Cichscaffold_610256270.2 Flavonoid 4CL low borderline
Cichscaffold_700276970.1 Flavonoid 4CL low borderline
Cichscaffold_740283520.1 Flavonoid 4CL medium pass
Cichscaffold_740283540.1 Flavonoid 4CL medium pass
Cichscaffold_7730288530.1 Flavonoid 4CL medium pass
Cichscaffold_7730288550.1 Flavonoid 4CL medium pass
Cichscaffold_7730288560.1 Flavonoid 4CL medium pass
Cichscaffold_8450300390.1 Flavonoid 4CL low borderline
Cichscaffold_8720303990.1 Flavonoid 4CL low borderline
Cichscaffold_90307310.1 Flavonoid 4CL low borderline
Cichscaffold_90307310.2 Flavonoid 4CL low borderline
Cichscaffold_910311500.1 Flavonoid 4CL medium pass
Cichscaffold_920312910.1 Flavonoid 4CL medium pass
Cichscaffold_920312910.2 Flavonoid 4CL medium pass
Cichscaffold_1040006750.1 Flavonoid ANR low borderline
Cichscaffold_1040006750.2 Flavonoid ANR low borderline
Cichscaffold_11080012080.1 Flavonoid ANR medium borderline
Cichscaffold_120022560.1 Flavonoid ANR medium borderline
Cichscaffold_1240026250.1 Flavonoid ANR medium borderline
Cichscaffold_130030580.1 Flavonoid ANR medium borderline
Cichscaffold_1730067850.1 Flavonoid ANR medium borderline
Cichscaffold_190080490.1 Flavonoid ANR medium borderline
Cichscaffold_190080500.1 Flavonoid ANR medium borderline
Cichscaffold_1_20087910.1 Flavonoid ANR medium borderline
Cichscaffold_1_20087920.1 Flavonoid ANR medium borderline
Cichscaffold_1_20087930.1 Flavonoid ANR low borderline
Cichscaffold_20091050.1 Flavonoid ANR medium borderline
Cichscaffold_2010096170.1 Flavonoid ANR medium borderline
Cichscaffold_2210107760.1 Flavonoid ANR low borderline
Cichscaffold_2210107760.2 Flavonoid ANR low borderline
Cichscaffold_2230108590.1 Flavonoid ANR low borderline
Cichscaffold_2370117150.1 Flavonoid ANR medium borderline
Cichscaffold_2370117150.2 Flavonoid ANR medium borderline
Cichscaffold_3000152030.1 Flavonoid ANR medium borderline
Cichscaffold_3000152030.2 Flavonoid ANR medium borderline
Cichscaffold_3000152030.3 Flavonoid ANR medium borderline
Cichscaffold_3000152030.4 Flavonoid ANR medium borderline
Cichscaffold_3900191120.1 Flavonoid ANR medium borderline
Cichscaffold_4480211700.1 Flavonoid ANR medium borderline
Cichscaffold_4480211770.1 Flavonoid ANR low borderline
Cichscaffold_4940226600.1 Flavonoid ANR medium borderline
Cichscaffold_70275920.1 Flavonoid ANR low borderline
Cichscaffold_70275940.1 Flavonoid ANR medium borderline
Cichscaffold_890306010.1 Flavonoid ANR medium borderline
Cichscaffold_120021930.1 Flavonoid ANS/LDOX low borderline
Cichscaffold_1350036670.1 Flavonoid ANS/LDOX medium borderline
Cichscaffold_1560054340.1 Flavonoid ANS/LDOX low borderline
Cichscaffold_1890079110.1 Flavonoid ANS/LDOX low borderline
Cichscaffold_2300114250.1 Flavonoid ANS/LDOX medium borderline
Cichscaffold_24120120820.1 Flavonoid ANS/LDOX medium borderline