PlantSME Plant secondary metabolism enzyme database

Citrus ichangensis (citrus_ichangensis)

Imported from atlas release summary for Citrus ichangensis.

1849
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 490 19 BAHD (197) View species results
Alkaloid pathway 460 26 NMT (81) View species results
Phenylpropanoid pathway 410 12 POD (165) View species results
Rosmarinic acid pathway 189 7 C4H (105) View species results
Flavonoid pathway 168 13 UFGT (42) View species results
Steroid pathway 132 15 CAS (56) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2488 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 277 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Gene Pathway Family Confidence Status
Cichscaffold_2810139290.1 Flavonoid ANS/LDOX low borderline
Cichscaffold_2810139300.1 Flavonoid ANS/LDOX medium borderline
Cichscaffold_2810139330.1 Flavonoid ANS/LDOX medium borderline
Cichscaffold_3120157990.1 Flavonoid ANS/LDOX medium borderline
Cichscaffold_48480223660.1 Flavonoid ANS/LDOX medium pass
Cichscaffold_490224810.1 Flavonoid ANS/LDOX low borderline
Cichscaffold_6400263280.1 Flavonoid ANS/LDOX low borderline
Cichscaffold_6400263320.1 Flavonoid ANS/LDOX medium borderline
Cichscaffold_6550266200.1 Flavonoid ANS/LDOX medium borderline
Cichscaffold_7040277850.1 Flavonoid ANS/LDOX medium borderline
Cichscaffold_7510286060.1 Flavonoid ANS/LDOX medium borderline
Cichscaffold_820297430.2 Flavonoid ANS/LDOX medium borderline
Cichscaffold_90307360.1 Flavonoid ANS/LDOX medium borderline
Cichscaffold_11640017070.1 Flavonoid C4H low borderline
Cichscaffold_1480046280.1 Flavonoid C4H low borderline
Cichscaffold_180073650.1 Flavonoid C4H medium borderline
Cichscaffold_1960083910.1 Flavonoid C4H low borderline
Cichscaffold_2180104500.1 Flavonoid C4H medium borderline
Cichscaffold_3410172270.1 Flavonoid C4H low borderline
Cichscaffold_65020265760.1 Flavonoid C4H medium borderline
Cichscaffold_71_20279660.1 Flavonoid C4H medium borderline
Cichscaffold_16200060070.1 Flavonoid CHI medium pass
Cichscaffold_400195630.1 Flavonoid CHI medium pass
Cichscaffold_400195630.2 Flavonoid CHI medium pass
Cichscaffold_540240280.1 Flavonoid CHI low borderline
Cichscaffold_540240280.2 Flavonoid CHI low borderline
Cichscaffold_540240280.3 Flavonoid CHI low borderline
Cichscaffold_7330282440.1 Flavonoid CHI medium pass
Cichscaffold_980319460.1 Flavonoid CHI low borderline
Cichscaffold_1090011300.1 Flavonoid CHS medium pass
Cichscaffold_1090011310.1 Flavonoid CHS medium pass
Cichscaffold_120022570.1 Flavonoid CHS medium pass
Cichscaffold_130030590.1 Flavonoid CHS medium pass
Cichscaffold_13970039930.1 Flavonoid CHS medium pass
Cichscaffold_1_20088640.1 Flavonoid CHS medium pass
Cichscaffold_2040097540.1 Flavonoid CHS low borderline
Cichscaffold_2350116350.1 Flavonoid CHS medium pass
Cichscaffold_260130090.1 Flavonoid CHS medium pass
Cichscaffold_34310173150.1 Flavonoid CHS medium pass
Cichscaffold_3440173180.1 Flavonoid CHS medium pass
Cichscaffold_370182940.1 Flavonoid CHS medium pass
Cichscaffold_370182950.1 Flavonoid CHS medium pass
Cichscaffold_370182970.1 Flavonoid CHS medium pass
Cichscaffold_370182980.1 Flavonoid CHS medium pass
Cichscaffold_370183020.1 Flavonoid CHS medium pass
Cichscaffold_370183460.1 Flavonoid CHS medium pass
Cichscaffold_4940226580.1 Flavonoid CHS medium pass
Cichscaffold_5290237440.1 Flavonoid CHS medium pass
Cichscaffold_610256540.1 Flavonoid CHS medium pass
Cichscaffold_610256550.1 Flavonoid CHS medium pass