PlantSME Plant secondary metabolism enzyme database

Ginkgo biloba (ginkgo_biloba)

Imported from atlas release summary for Ginkgo biloba.

1873
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Current group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 25.57% Alkaloid pathway 22.74% Phenylpropanoid pathway 21.52% Flavonoid pathway 13.88% Rosmarinic acid pathway 11.27% Steroid pathway 5.02%
Family Distribution
C4H 7.07% C3'H/CYP98A 6.98% CYP76 4.81% BAHD 4.61% 4CL 4.31% IFS 4.29% UGT 3.63% POD 3.61%
Other Families 60.68%
More Families (96)
7DLGT 161 3.5% UFGT 159 3.46% T3O 157 3.42% DWF4/CYP90B1 155 3.37% F3H 138 3.0% BR6OX2/CYP85A2 97 2.11% F3'H/CYP75B 91 1.98% CODM/T6ODM 82 1.78% CAD 74 1.61% NMT 69 1.5% TRI/TRII 62 1.35% STR 61 1.33% H6H 59 1.28% IFR 51 1.11% HCT 51 1.11% T16H 50 1.09% CAS 50 1.09% COMT 46 1.0% LAC 45 0.98% G8O/G8H 43 0.94% SGD 40 0.87% RAS 40 0.87% TPS 40 0.87% PAL 39 0.85% SMT1/SMT2/SMT3 39 0.85% ANR 38 0.83% GES 36 0.78% IO 33 0.72% PYKS 33 0.72% CCR 30 0.65% SLS 29 0.63% PMT 28 0.61% CPD/CYP90A1 28 0.61% 16OMT 27 0.59% COR 27 0.59% CSE 27 0.59% GS 26 0.57% TAT 26 0.57% F3'5'H/CYP75A 25 0.54% FNS 24 0.52% CYP719 21 0.46% 8HGO 19 0.41% HMGR 19 0.41% CYP71 19 0.41% CYP90D1 18 0.39% 7DLH 17 0.37% DFR 17 0.37% CHS 17 0.37% BR6OX1/CYP85A1 17 0.37% LAMT 16 0.35% ANS/LDOX 16 0.35% NCS 15 0.33% ISY 13 0.28% F5H/CYP84A 12 0.26% ROT3/CYP90C1 12 0.26% CYP51G1 11 0.24% BBE 10 0.22% CCoAOMT 10 0.22% SQS/FDFT1 10 0.22% FPPS 10 0.22% GGPPS 10 0.22% AACT 10 0.22% 6OMT_4OMT_SOMT 9 0.2% MPO 8 0.17% CNMT 8 0.17% CPR 8 0.17% CYP80B1 7 0.15% SQE 7 0.15% HMGS 7 0.15% TDC 6 0.13% HPPR 6 0.13% MVD 6 0.13% ADC 5 0.11% ODC 5 0.11% TYDC_DDC 5 0.11% HDR/IspH 5 0.11% PMK 5 0.11% MVK 4 0.09% DXS 4 0.09% CHI 3 0.07% SMO1/SMO2 3 0.07% XMT_MXMT_DXMT 2 0.04% DWF1 2 0.04% CPI1 2 0.04% DET2 2 0.04% FK 2 0.04% CMK/IspE 2 0.04% MCT/IspD 2 0.04% HDS/IspG 2 0.04% FLS 1 0.02% DWF7 1 0.02% DWF5 1 0.02% HYD1 1 0.02% IDI 1 0.02% MDS/IspF 1 0.02% DXR 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 479 19 BAHD (173) View species results
Alkaloid pathway 426 21 7DLGT (98) View species results
Phenylpropanoid pathway 403 10 POD (161) View species results
Flavonoid pathway 260 10 UFGT (149) View species results
Rosmarinic acid pathway 211 7 C4H (109) View species results
Steroid pathway 94 12 CAS (48) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1906 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 303 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 6OMT_4OMT_SOMT
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Gene Pathway Family Confidence Status Best Target
Gbil02G0006930.1 Alkaloid 6OMT_4OMT_SOMT medium pass 6OMT_4OMT_SOMT__00004__sp_Q6WUC1_6OMT_PAPSO
Gbil04G0008690.1 Alkaloid 6OMT_4OMT_SOMT medium pass 6OMT_4OMT_SOMT__00006__sp_Q7XB11_4OMT1_PAPSO
Gbil04G0008700.1 Alkaloid 6OMT_4OMT_SOMT medium pass 6OMT_4OMT_SOMT__00007__sp_Q9LEL6_6OMT_COPJA
Gbil06G0002470.1 Alkaloid 6OMT_4OMT_SOMT medium borderline 6OMT_4OMT_SOMT__00003__sp_Q5C9L7_6OMT_THLFG
Gbil06G0008620.1 Alkaloid 6OMT_4OMT_SOMT medium borderline 6OMT_4OMT_SOMT__00003__sp_Q5C9L7_6OMT_THLFG
Gbil10G0012120.1 Alkaloid 6OMT_4OMT_SOMT medium borderline 6OMT_4OMT_SOMT__00005__sp_Q7XB10_4OMT2_PAPSO
Gbil10G0012530.1 Alkaloid 6OMT_4OMT_SOMT medium borderline 6OMT_4OMT_SOMT__00003__sp_Q5C9L7_6OMT_THLFG
Gbil10G0012540.1 Alkaloid 6OMT_4OMT_SOMT medium borderline 6OMT_4OMT_SOMT__00003__sp_Q5C9L7_6OMT_THLFG
Gbilctg250630001680.1 Alkaloid 6OMT_4OMT_SOMT medium pass 6OMT_4OMT_SOMT__00003__sp_Q5C9L7_6OMT_THLFG