Ginkgo biloba (ginkgo_biloba)
Imported from atlas release summary for Ginkgo biloba.
1873
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1873
Candidate Genes
C4H
7.07%
C3'H/CYP98A
6.98%
CYP76
4.81%
BAHD
4.61%
4CL
4.31%
IFS
4.29%
UGT
3.63%
POD
3.61%
Other Families
60.68%
More Families (96)
7DLGT
161
3.5%
UFGT
159
3.46%
T3O
157
3.42%
DWF4/CYP90B1
155
3.37%
F3H
138
3.0%
BR6OX2/CYP85A2
97
2.11%
F3'H/CYP75B
91
1.98%
CODM/T6ODM
82
1.78%
CAD
74
1.61%
NMT
69
1.5%
TRI/TRII
62
1.35%
STR
61
1.33%
H6H
59
1.28%
IFR
51
1.11%
HCT
51
1.11%
T16H
50
1.09%
CAS
50
1.09%
COMT
46
1.0%
LAC
45
0.98%
G8O/G8H
43
0.94%
SGD
40
0.87%
RAS
40
0.87%
TPS
40
0.87%
PAL
39
0.85%
SMT1/SMT2/SMT3
39
0.85%
ANR
38
0.83%
GES
36
0.78%
IO
33
0.72%
PYKS
33
0.72%
CCR
30
0.65%
SLS
29
0.63%
PMT
28
0.61%
CPD/CYP90A1
28
0.61%
16OMT
27
0.59%
COR
27
0.59%
CSE
27
0.59%
GS
26
0.57%
TAT
26
0.57%
F3'5'H/CYP75A
25
0.54%
FNS
24
0.52%
CYP719
21
0.46%
8HGO
19
0.41%
HMGR
19
0.41%
CYP71
19
0.41%
CYP90D1
18
0.39%
7DLH
17
0.37%
DFR
17
0.37%
CHS
17
0.37%
BR6OX1/CYP85A1
17
0.37%
LAMT
16
0.35%
ANS/LDOX
16
0.35%
NCS
15
0.33%
ISY
13
0.28%
F5H/CYP84A
12
0.26%
ROT3/CYP90C1
12
0.26%
CYP51G1
11
0.24%
BBE
10
0.22%
CCoAOMT
10
0.22%
SQS/FDFT1
10
0.22%
FPPS
10
0.22%
GGPPS
10
0.22%
AACT
10
0.22%
6OMT_4OMT_SOMT
9
0.2%
MPO
8
0.17%
CNMT
8
0.17%
CPR
8
0.17%
CYP80B1
7
0.15%
SQE
7
0.15%
HMGS
7
0.15%
TDC
6
0.13%
HPPR
6
0.13%
MVD
6
0.13%
ADC
5
0.11%
ODC
5
0.11%
TYDC_DDC
5
0.11%
HDR/IspH
5
0.11%
PMK
5
0.11%
MVK
4
0.09%
DXS
4
0.09%
CHI
3
0.07%
SMO1/SMO2
3
0.07%
XMT_MXMT_DXMT
2
0.04%
DWF1
2
0.04%
CPI1
2
0.04%
DET2
2
0.04%
FK
2
0.04%
CMK/IspE
2
0.04%
MCT/IspD
2
0.04%
HDS/IspG
2
0.04%
FLS
1
0.02%
DWF7
1
0.02%
DWF5
1
0.02%
HYD1
1
0.02%
IDI
1
0.02%
MDS/IspF
1
0.02%
DXR
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 479 | 19 | BAHD (173) | View species results |
| Alkaloid pathway | 426 | 21 | 7DLGT (98) | View species results |
| Phenylpropanoid pathway | 403 | 10 | POD (161) | View species results |
| Flavonoid pathway | 260 | 10 | UFGT (149) | View species results |
| Rosmarinic acid pathway | 211 | 7 | C4H (109) | View species results |
| Steroid pathway | 94 | 12 | CAS (48) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 1906 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 303 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Gbil01G0004250.1 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Gbil01G0008770.1 | Alkaloid | NMT | medium | borderline | NMT__00011__sp_A9X7L0_ANMT_RUTGR |
| Gbil01G0013250.1 | Alkaloid | NMT | medium | pass | NMT__00034__sp_Q5VN06_CLF_ORYSJ |
| Gbil01G0015650.1 | Alkaloid | NMT | medium | pass | NMT__00039__sp_Q84W92_ANM13_ARATH |
| Gbil01G0020410.1 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Gbil02G0000710.1 | Alkaloid | NMT | low | borderline | NMT__00047__sp_Q8VZJ1_ATXR5_ARATH |
| Gbil02G0017240.1 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| Gbil02G0020580.1 | Alkaloid | NMT | medium | borderline | NMT__00002__sp_A0A075D6M1_NNMT_RAUSE |
| Gbil02G0022010.1 | Alkaloid | NMT | medium | borderline | NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB |
| Gbil03G0004370.1 | Alkaloid | NMT | medium | borderline | NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB |
| Gbil03G0004760.1 | Alkaloid | NMT | medium | pass | NMT__00025__sp_P93831_CLF_ARATH |
| Gbil03G0004770.1 | Alkaloid | NMT | medium | pass | NMT__00034__sp_Q5VN06_CLF_ORYSJ |
| Gbil03G0005310.1 | Alkaloid | NMT | medium | pass | NMT__00032__sp_Q5PP37_ATXR2_ARATH |
| Gbil03G0011830.1 | Alkaloid | NMT | low | borderline | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| Gbil03G0020820.1 | Alkaloid | NMT | medium | pass | NMT__00020__sp_O23372_ATXR3_ARATH |
| Gbil04G0001100.1 | Alkaloid | NMT | medium | pass | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| Gbil04G0002910.1 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Gbil04G0005930.1 | Alkaloid | NMT | low | borderline | NMT__00024__sp_P0CB22_ATX2_ARATH |
| Gbil04G0008410.1 | Alkaloid | NMT | medium | pass | NMT__00061__sp_Q9SAH5_PLMT_ARATH |
| Gbil04G0013110.1 | Alkaloid | NMT | medium | borderline | NMT__00053__sp_Q9C6B9_PEAM3_ARATH |
| Gbil04G0016900.1 | Alkaloid | NMT | low | borderline | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| Gbil04G0017360.1 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| Gbil04G0018910.1 | Alkaloid | NMT | medium | pass | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Gbil04G0019530.1 | Alkaloid | NMT | low | borderline | NMT__00047__sp_Q8VZJ1_ATXR5_ARATH |
| Gbil05G0000540.1 | Alkaloid | NMT | low | borderline | NMT__00049__sp_Q93YF5_SUVH1_TOBAC |
| Gbil05G0002330.1 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Gbil05G0002910.1 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Gbil05G0007470.1 | Alkaloid | NMT | medium | pass | NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI |
| Gbil05G0014780.1 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| Gbil05G0021020.1 | Alkaloid | NMT | medium | borderline | NMT__00067__sp_Q9T0G7_SUVH9_ARATH |
| Gbil06G0004600.1 | Alkaloid | NMT | medium | pass | NMT__00040__sp_Q84WW6_ASHH1_ARATH |
| Gbil06G0006710.1 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Gbil06G0012460.1 | Alkaloid | NMT | medium | borderline | NMT__00018__sp_I1M2U5_NAMT1_SOYBN |
| Gbil06G0012900.1 | Alkaloid | NMT | low | borderline | NMT__00047__sp_Q8VZJ1_ATXR5_ARATH |
| Gbil06G0018970.1 | Alkaloid | NMT | low | borderline | NMT__00067__sp_Q9T0G7_SUVH9_ARATH |
| Gbil06G0021310.1 | Alkaloid | NMT | medium | pass | NMT__00021__sp_O64827_SUVR5_ARATH |
| Gbil07G0001780.1 | Alkaloid | NMT | medium | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| Gbil07G0002540.1 | Alkaloid | NMT | medium | pass | NMT__00060__sp_Q9MAT5_ANM10_ARATH |
| Gbil07G0003850.1 | Alkaloid | NMT | medium | pass | NMT__00062__sp_Q9SCP7_NAMT1_ARATH |
| Gbil07G0007990.1 | Alkaloid | NMT | low | borderline | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| Gbil07G0014990.1 | Alkaloid | NMT | medium | pass | NMT__00054__sp_Q9FF80_SUVH1_ARATH |
| Gbil07G0018130.1 | Alkaloid | NMT | medium | pass | NMT__00024__sp_P0CB22_ATX2_ARATH |
| Gbil08G0011950.1 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| Gbil08G0013620.1 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Gbil08G0015600.1 | Alkaloid | NMT | medium | borderline | NMT__00050__sp_Q944H0_PEAM2_ARATH |
| Gbil08G0015610.1 | Alkaloid | NMT | medium | borderline | NMT__00050__sp_Q944H0_PEAM2_ARATH |
| Gbil08G0021420.1 | Alkaloid | NMT | medium | pass | NMT__00021__sp_O64827_SUVR5_ARATH |
| Gbil09G0009870.1 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Gbil09G0016010.1 | Alkaloid | NMT | medium | pass | NMT__00021__sp_O64827_SUVR5_ARATH |
| Gbil09G0020250.1 | Alkaloid | NMT | low | borderline | NMT__00017__sp_F4K1J4_ATXR7_ARATH |