PlantSME Plant secondary metabolism enzyme database

Ginkgo biloba (ginkgo_biloba)

Imported from atlas release summary for Ginkgo biloba.

2037
Candidate Protein Records
1873
Pathway-Level Records
4596
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 479 19 BAHD (173) View species results
Alkaloid pathway 426 21 7DLGT (98) View species results
Phenylpropanoid pathway 403 10 POD (161) View species results
Flavonoid pathway 260 10 UFGT (149) View species results
Rosmarinic acid pathway 211 7 C4H (109) View species results
Steroid pathway 94 12 CAS (48) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1906 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 303 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Gbil12G0006550.1 Alkaloid H6H medium pass
Gbil12G0006570.1 Alkaloid H6H low borderline
Gbil12G0009200.1 Alkaloid H6H medium borderline
Gbil12G0010450.1 Alkaloid H6H medium borderline
Gbil12G0010500.1 Alkaloid H6H medium borderline
Gbil12G0017090.1 Alkaloid H6H medium borderline
Gbil12G0018180.1 Alkaloid H6H low borderline
Gbil01G0015890.1 Alkaloid IO medium borderline
Gbil02G0005720.1 Alkaloid IO medium borderline
Gbil02G0005730.1 Alkaloid IO medium borderline
Gbil02G0005740.1 Alkaloid IO medium borderline
Gbil02G0005760.1 Alkaloid IO medium borderline
Gbil02G0021340.1 Alkaloid IO medium borderline
Gbil03G0016800.1 Alkaloid IO low borderline
Gbil03G0016810.1 Alkaloid IO low borderline
Gbil03G0016820.1 Alkaloid IO low borderline
Gbil03G0016830.1 Alkaloid IO low borderline
Gbil05G0011670.1 Alkaloid IO low borderline
Gbil06G0000530.1 Alkaloid IO medium borderline
Gbil06G0002070.1 Alkaloid IO medium borderline
Gbil06G0002080.1 Alkaloid IO medium borderline
Gbil06G0004150.1 Alkaloid IO medium borderline
Gbil06G0005240.1 Alkaloid IO medium borderline
Gbil06G0005320.1 Alkaloid IO low borderline
Gbil06G0007340.1 Alkaloid IO medium borderline
Gbil06G0007350.1 Alkaloid IO medium borderline
Gbil06G0018350.1 Alkaloid IO low borderline
Gbil06G0018360.1 Alkaloid IO low borderline
Gbil06G0018380.1 Alkaloid IO low borderline
Gbil06G0018420.1 Alkaloid IO low borderline
Gbil06G0018450.1 Alkaloid IO low borderline
Gbil08G0011590.1 Alkaloid IO medium borderline
Gbil08G0017510.1 Alkaloid IO medium borderline
Gbil08G0017640.1 Alkaloid IO medium borderline
Gbil08G0017670.1 Alkaloid IO medium borderline
Gbil08G0017720.1 Alkaloid IO medium borderline
Gbil10G0004580.1 Alkaloid IO medium borderline
Gbil10G0006210.1 Alkaloid IO low borderline
Gbil10G0019280.1 Alkaloid IO medium borderline
Gbil12G0005060.1 Alkaloid IO low borderline
Gbil02G0004810.1 Alkaloid ISY medium pass
Gbil03G0006020.1 Alkaloid ISY medium pass
Gbil05G0001030.1 Alkaloid ISY medium pass
Gbil05G0001040.1 Alkaloid ISY medium pass
Gbil05G0003460.1 Alkaloid ISY medium pass
Gbil06G0018440.1 Alkaloid ISY medium pass
Gbil08G0016510.1 Alkaloid ISY medium pass
Gbil08G0016520.1 Alkaloid ISY medium pass
Gbil09G0003240.1 Alkaloid ISY low borderline
Gbil09G0010090.1 Alkaloid ISY medium pass