PlantSME Plant secondary metabolism enzyme database

Ginkgo biloba (ginkgo_biloba)

Imported from atlas release summary for Ginkgo biloba.

2037
Candidate Protein Records
1873
Pathway-Level Records
4596
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 479 19 BAHD (173) View species results
Alkaloid pathway 426 21 7DLGT (98) View species results
Phenylpropanoid pathway 403 10 POD (161) View species results
Flavonoid pathway 260 10 UFGT (149) View species results
Rosmarinic acid pathway 211 7 C4H (109) View species results
Steroid pathway 94 12 CAS (48) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1906 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 303 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Gbil11G0001800.1 Alkaloid ISY high pass
Gbil11G0001840.1 Alkaloid ISY medium pass
Gbil12G0011590.1 Alkaloid ISY medium pass
Gbil01G0014950.1 Alkaloid LAMT medium borderline
Gbil01G0014960.1 Alkaloid LAMT medium borderline
Gbil01G0015010.1 Alkaloid LAMT medium borderline
Gbil01G0015040.1 Alkaloid LAMT medium borderline
Gbil01G0015470.1 Alkaloid LAMT medium borderline
Gbil01G0026190.1 Alkaloid LAMT low borderline
Gbil02G0007700.1 Alkaloid LAMT medium borderline
Gbil08G0003010.1 Alkaloid LAMT medium borderline
Gbil08G0003140.1 Alkaloid LAMT medium borderline
Gbil08G0003150.1 Alkaloid LAMT medium borderline
Gbil08G0003210.1 Alkaloid LAMT medium borderline
Gbil09G0006220.1 Alkaloid LAMT medium pass
Gbil10G0015160.1 Alkaloid LAMT medium borderline
Gbil11G0006080.1 Alkaloid LAMT medium borderline
Gbil11G0011160.1 Alkaloid LAMT medium borderline
Gbil11G0011170.1 Alkaloid LAMT low borderline
Gbil01G0010600.1 Alkaloid MPO medium pass
Gbil05G0005770.1 Alkaloid MPO medium pass
Gbil05G0005800.1 Alkaloid MPO medium pass
Gbil05G0018000.1 Alkaloid MPO medium pass
Gbil08G0010210.1 Alkaloid MPO medium pass
Gbil09G0015080.1 Alkaloid MPO medium pass
Gbil09G0015090.1 Alkaloid MPO low borderline
Gbil09G0015100.1 Alkaloid MPO medium pass
Gbil01G0009810.1 Alkaloid NCS medium borderline
Gbil01G0009850.1 Alkaloid NCS medium borderline
Gbil01G0019470.1 Alkaloid NCS medium borderline
Gbil02G0003850.1 Alkaloid NCS medium borderline
Gbil02G0013260.1 Alkaloid NCS medium borderline
Gbil03G0003640.1 Alkaloid NCS medium borderline
Gbil03G0003650.1 Alkaloid NCS medium borderline
Gbil03G0003670.1 Alkaloid NCS medium borderline
Gbil05G0003470.1 Alkaloid NCS medium borderline
Gbil05G0010220.1 Alkaloid NCS medium borderline
Gbil07G0000540.1 Alkaloid NCS medium pass
Gbil07G0009960.1 Alkaloid NCS medium borderline
Gbil11G0008400.1 Alkaloid NCS medium borderline
Gbil11G0008430.1 Alkaloid NCS medium borderline
Gbil12G0010460.1 Alkaloid NCS medium borderline
Gbil01G0004250.1 Alkaloid NMT low borderline
Gbil01G0008770.1 Alkaloid NMT medium borderline
Gbil01G0013250.1 Alkaloid NMT medium pass
Gbil01G0015650.1 Alkaloid NMT medium pass
Gbil01G0020410.1 Alkaloid NMT low borderline
Gbil02G0000710.1 Alkaloid NMT low borderline
Gbil02G0017240.1 Alkaloid NMT medium pass
Gbil02G0020580.1 Alkaloid NMT medium borderline