PlantSME Plant secondary metabolism enzyme database

Ginkgo biloba (ginkgo_biloba)

Imported from atlas release summary for Ginkgo biloba.

2037
Candidate Protein Records
1873
Pathway-Level Records
4596
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 479 19 BAHD (173) View species results
Alkaloid pathway 426 21 7DLGT (98) View species results
Phenylpropanoid pathway 403 10 POD (161) View species results
Flavonoid pathway 260 10 UFGT (149) View species results
Rosmarinic acid pathway 211 7 C4H (109) View species results
Steroid pathway 94 12 CAS (48) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1906 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 303 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Gbil11G0001420.1 Alkaloid NMT medium borderline
Gbil11G0004380.1 Alkaloid NMT medium pass
Gbil11G0007920.1 Alkaloid NMT medium borderline
Gbil11G0008890.1 Alkaloid NMT medium pass
Gbil11G0008900.1 Alkaloid NMT medium pass
Gbil11G0011030.1 Alkaloid NMT low borderline
Gbil12G0000170.1 Alkaloid NMT medium pass
Gbil12G0005260.1 Alkaloid NMT medium borderline
Gbil12G0007240.1 Alkaloid NMT medium pass
Gbil12G0008990.1 Alkaloid NMT medium pass
Gbilctg372590001980.1 Alkaloid NMT medium borderline
Gbil03G0006120.1 Alkaloid ODC medium pass
Gbil03G0006130.1 Alkaloid ODC medium pass
Gbil03G0006140.1 Alkaloid ODC medium pass
Gbil03G0006150.1 Alkaloid ODC medium pass
Gbil08G0001000.1 Alkaloid ODC low borderline
Gbil01G0023090.1 Alkaloid PMT low borderline
Gbil01G0027980.1 Alkaloid PMT medium pass
Gbil01G0028540.1 Alkaloid PMT medium borderline
Gbil02G0013040.1 Alkaloid PMT low borderline
Gbil02G0013620.1 Alkaloid PMT medium pass
Gbil02G0013640.1 Alkaloid PMT low borderline
Gbil02G0014350.1 Alkaloid PMT medium pass
Gbil02G0015770.1 Alkaloid PMT medium pass
Gbil02G0016770.1 Alkaloid PMT medium pass
Gbil02G0016780.1 Alkaloid PMT medium pass
Gbil02G0016790.1 Alkaloid PMT medium pass
Gbil02G0016800.1 Alkaloid PMT low borderline
Gbil02G0016810.1 Alkaloid PMT low borderline
Gbil02G0016950.1 Alkaloid PMT low borderline
Gbil02G0016960.1 Alkaloid PMT medium pass
Gbil02G0016970.1 Alkaloid PMT medium pass
Gbil02G0016980.1 Alkaloid PMT medium pass
Gbil02G0016990.1 Alkaloid PMT medium pass
Gbil03G0018830.1 Alkaloid PMT medium pass
Gbil07G0002470.1 Alkaloid PMT low borderline
Gbil07G0003750.1 Alkaloid PMT low borderline
Gbil09G0007960.1 Alkaloid PMT medium pass
Gbil09G0014970.1 Alkaloid PMT medium pass
Gbil10G0014780.1 Alkaloid PMT low borderline
Gbil10G0018820.1 Alkaloid PMT medium borderline
Gbil11G0003000.1 Alkaloid PMT low borderline
Gbil11G0007750.1 Alkaloid PMT low borderline
Gbil12G0011880.1 Alkaloid PMT low borderline
Gbil01G0026010.1 Alkaloid PYKS low borderline
Gbil01G0026020.1 Alkaloid PYKS low borderline
Gbil03G0000290.1 Alkaloid PYKS low borderline
Gbil03G0003540.1 Alkaloid PYKS high pass
Gbil03G0008750.1 Alkaloid PYKS low borderline
Gbil03G0008760.1 Alkaloid PYKS low borderline