PlantSME Plant secondary metabolism enzyme database

Ginkgo biloba (ginkgo_biloba)

Imported from atlas release summary for Ginkgo biloba.

2037
Candidate Protein Records
1873
Pathway-Level Records
4596
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 479 19 BAHD (173) View species results
Alkaloid pathway 426 21 7DLGT (98) View species results
Phenylpropanoid pathway 403 10 POD (161) View species results
Flavonoid pathway 260 10 UFGT (149) View species results
Rosmarinic acid pathway 211 7 C4H (109) View species results
Steroid pathway 94 12 CAS (48) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1906 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 303 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Gbil11G0001940.1 Terpenoid CYP76 medium borderline
Gbil11G0005360.1 Terpenoid CYP76 medium borderline
Gbil11G0005370.1 Terpenoid CYP76 medium borderline
Gbil11G0005810.1 Terpenoid CYP76 medium pass
Gbil12G0006560.1 Terpenoid CYP76 low borderline
Gbil12G0006590.1 Terpenoid CYP76 low borderline
Gbil12G0007150.1 Terpenoid CYP76 medium borderline
Gbil12G0007160.1 Terpenoid CYP76 medium borderline
Gbilctg1592190000940.1 Terpenoid CYP76 medium borderline
Gbilctg251580001700.1 Terpenoid CYP76 medium pass
Gbilctg282860001790.1 Terpenoid CYP76 medium pass
Gbilctg282870001800.1 Terpenoid CYP76 medium borderline
Gbil07G0011480.1 Terpenoid DXR high pass
Gbil05G0015480.1 Terpenoid DXS medium pass
Gbil07G0003520.1 Terpenoid DXS medium pass
Gbil07G0009300.1 Terpenoid DXS medium pass
Gbil10G0000140.1 Terpenoid DXS medium pass
Gbil02G0005390.1 Terpenoid FPPS medium pass
Gbil02G0005400.1 Terpenoid FPPS medium pass
Gbil02G0005420.1 Terpenoid FPPS medium pass
Gbil03G0014020.1 Terpenoid FPPS medium pass
Gbil03G0014030.1 Terpenoid FPPS medium pass
Gbil08G0005240.1 Terpenoid FPPS medium borderline
Gbil09G0012180.1 Terpenoid FPPS low borderline
Gbil09G0012210.1 Terpenoid FPPS medium pass
Gbil09G0012220.1 Terpenoid FPPS low borderline
Gbil12G0016870.1 Terpenoid FPPS low borderline
Gbil03G0012790.1 Terpenoid GGPPS medium borderline
Gbil03G0019260.1 Terpenoid GGPPS medium borderline
Gbil04G0012100.1 Terpenoid GGPPS medium borderline
Gbil04G0012110.1 Terpenoid GGPPS medium borderline
Gbil08G0003780.1 Terpenoid GGPPS medium borderline
Gbil08G0003790.1 Terpenoid GGPPS medium borderline
Gbil08G0003800.1 Terpenoid GGPPS medium borderline
Gbil10G0001180.1 Terpenoid GGPPS medium borderline
Gbil10G0001190.1 Terpenoid GGPPS medium borderline
Gbil11G0004690.1 Terpenoid GGPPS medium borderline
Gbil03G0013750.1 Terpenoid HDR/IspH high pass
Gbil03G0013790.1 Terpenoid HDR/IspH high pass
Gbil05G0018360.1 Terpenoid HDR/IspH low borderline
Gbil06G0009610.1 Terpenoid HDR/IspH high pass
Gbil09G0019820.1 Terpenoid HDR/IspH high pass
Gbil10G0002740.1 Terpenoid HDS/IspG high pass
Gbil12G0016560.1 Terpenoid HDS/IspG high pass
Gbil01G0007720.1 Terpenoid HMGR low borderline
Gbil01G0007730.1 Terpenoid HMGR low borderline
Gbil01G0007760.1 Terpenoid HMGR low borderline
Gbil01G0018340.1 Terpenoid HMGR low borderline
Gbil04G0011670.1 Terpenoid HMGR medium pass
Gbil04G0011700.1 Terpenoid HMGR medium pass