PlantSME Plant secondary metabolism enzyme database

Gossypium raimondii (gossypium_raimondii)

Imported from atlas release summary for Gossypium raimondii.

3434
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 968 21 BAHD (459) View species results
Phenylpropanoid pathway 784 11 POD (333) View species results
Alkaloid pathway 770 23 NMT (140) View species results
Flavonoid pathway 341 12 UFGT (176) View species results
Steroid pathway 315 13 CAS (138) View species results
Rosmarinic acid pathway 256 7 C4H (73) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2559 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 723 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: G8O/G8H
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Gene Pathway Family Confidence Status
Grai01G0008900.1 Alkaloid G8O/G8H low borderline
Grai01G0010460.1 Alkaloid G8O/G8H medium borderline
Grai01G0022270.1 Alkaloid G8O/G8H medium borderline
Grai02G0009770.1 Alkaloid G8O/G8H medium borderline
Grai02G0009800.1 Alkaloid G8O/G8H medium borderline
Grai02G0013020.1 Alkaloid G8O/G8H medium borderline
Grai03G0005170.1 Alkaloid G8O/G8H medium borderline
Grai03G0005860.1 Alkaloid G8O/G8H medium borderline
Grai03G0016530.1 Alkaloid G8O/G8H medium borderline
Grai03G0016610.1 Alkaloid G8O/G8H medium borderline
Grai04G0018720.1 Alkaloid G8O/G8H medium borderline
Grai04G0020200.1 Alkaloid G8O/G8H medium borderline
Grai04G0020540.1 Alkaloid G8O/G8H medium borderline
Grai06G0008180.1 Alkaloid G8O/G8H medium borderline
Grai06G0014050.1 Alkaloid G8O/G8H medium borderline
Grai06G0021120.1 Alkaloid G8O/G8H medium borderline
Grai06G0021700.1 Alkaloid G8O/G8H medium pass
Grai07G0021920.1 Alkaloid G8O/G8H medium borderline
Grai07G0034770.1 Alkaloid G8O/G8H medium borderline
Grai07G0034780.1 Alkaloid G8O/G8H medium borderline
Grai07G0034790.1 Alkaloid G8O/G8H medium borderline
Grai09G0007170.3 Alkaloid G8O/G8H low borderline
Grai09G0029390.1 Alkaloid G8O/G8H medium borderline
Grai09G0042450.1 Alkaloid G8O/G8H low borderline
Grai09G0042480.1 Alkaloid G8O/G8H medium borderline
Grai09G0042490.1 Alkaloid G8O/G8H medium borderline
Grai10G0001440.1 Alkaloid G8O/G8H medium borderline
Grai10G0001470.1 Alkaloid G8O/G8H medium borderline
Grai10G0017890.1 Alkaloid G8O/G8H medium borderline
Grai10G0021850.1 Alkaloid G8O/G8H medium borderline
Grai11G0020950.1 Alkaloid G8O/G8H medium borderline
Grai11G0023290.1 Alkaloid G8O/G8H medium borderline
Grai12G0016450.1 Alkaloid G8O/G8H medium borderline
Grai12G0017560.1 Alkaloid G8O/G8H medium borderline
Grai13G0002530.1 Alkaloid G8O/G8H medium pass
Grai13G0010350.1 Alkaloid G8O/G8H medium borderline
Graiscaffold_190001270.1 Alkaloid G8O/G8H low borderline
Graiscaffold_190001280.1 Alkaloid G8O/G8H medium borderline