PlantSME Plant secondary metabolism enzyme database

Gossypium raimondii (gossypium_raimondii)

Imported from atlas release summary for Gossypium raimondii.

3434
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 968 21 BAHD (459) View species results
Phenylpropanoid pathway 784 11 POD (333) View species results
Alkaloid pathway 770 23 NMT (140) View species results
Flavonoid pathway 341 12 UFGT (176) View species results
Steroid pathway 315 13 CAS (138) View species results
Rosmarinic acid pathway 256 7 C4H (73) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2559 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 723 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PMT
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Gene Pathway Family Confidence Status
Grai01G0006860.1 Alkaloid PMT medium borderline
Grai03G0011900.1 Alkaloid PMT low borderline
Grai03G0011900.2 Alkaloid PMT low borderline
Grai04G0011510.1 Alkaloid PMT medium borderline
Grai04G0011510.2 Alkaloid PMT medium borderline
Grai04G0011510.3 Alkaloid PMT medium borderline
Grai04G0011510.4 Alkaloid PMT medium borderline
Grai04G0011510.5 Alkaloid PMT medium borderline
Grai04G0011510.6 Alkaloid PMT medium borderline
Grai04G0019400.1 Alkaloid PMT low borderline
Grai05G0004610.2 Alkaloid PMT low borderline
Grai05G0018350.1 Alkaloid PMT medium borderline
Grai05G0018350.2 Alkaloid PMT medium borderline
Grai05G0018350.3 Alkaloid PMT medium borderline
Grai05G0018350.4 Alkaloid PMT medium borderline
Grai05G0018350.5 Alkaloid PMT medium borderline
Grai07G0002970.3 Alkaloid PMT low borderline
Grai07G0011660.1 Alkaloid PMT medium pass
Grai07G0024770.1 Alkaloid PMT low borderline
Grai07G0024790.1 Alkaloid PMT low borderline
Grai08G0026990.1 Alkaloid PMT medium borderline
Grai08G0026990.2 Alkaloid PMT medium borderline
Grai08G0026990.3 Alkaloid PMT medium borderline
Grai08G0026990.4 Alkaloid PMT medium borderline
Grai08G0026990.5 Alkaloid PMT medium borderline
Grai08G0026990.6 Alkaloid PMT medium borderline
Grai08G0026990.7 Alkaloid PMT medium borderline
Grai09G0005590.1 Alkaloid PMT low borderline
Grai09G0005590.2 Alkaloid PMT low borderline
Grai09G0005720.1 Alkaloid PMT low borderline
Grai09G0012260.1 Alkaloid PMT low borderline
Grai09G0012260.2 Alkaloid PMT low borderline
Grai09G0012260.3 Alkaloid PMT low borderline
Grai09G0012260.4 Alkaloid PMT low borderline
Grai09G0012260.5 Alkaloid PMT low borderline
Grai09G0018800.1 Alkaloid PMT low borderline
Grai10G0009710.1 Alkaloid PMT medium pass
Grai11G0016680.1 Alkaloid PMT low borderline
Grai11G0029170.1 Alkaloid PMT low borderline
Grai12G0007830.1 Alkaloid PMT low borderline
Grai13G0012150.1 Alkaloid PMT medium pass
Grai13G0012150.2 Alkaloid PMT medium pass
Grai13G0012160.1 Alkaloid PMT medium pass
Grai13G0018550.1 Alkaloid PMT medium pass
Grai13G0018570.1 Alkaloid PMT low borderline
Grai13G0019980.1 Alkaloid PMT low borderline