PlantSME Plant secondary metabolism enzyme database

Gossypium raimondii (gossypium_raimondii)

Imported from atlas release summary for Gossypium raimondii.

3434
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 968 21 BAHD (459) View species results
Phenylpropanoid pathway 784 11 POD (333) View species results
Alkaloid pathway 770 23 NMT (140) View species results
Flavonoid pathway 341 12 UFGT (176) View species results
Steroid pathway 315 13 CAS (138) View species results
Rosmarinic acid pathway 256 7 C4H (73) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2559 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 723 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IO
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Gene Pathway Family Confidence Status
Grai01G0009030.4 Alkaloid IO low borderline
Grai01G0013490.1 Alkaloid IO medium borderline
Grai02G0018400.1 Alkaloid IO medium borderline
Grai03G0002390.1 Alkaloid IO medium borderline
Grai03G0004730.1 Alkaloid IO medium borderline
Grai03G0007700.1 Alkaloid IO medium borderline
Grai03G0012550.2 Alkaloid IO low borderline
Grai03G0012550.6 Alkaloid IO low borderline
Grai03G0012550.7 Alkaloid IO low borderline
Grai04G0012970.1 Alkaloid IO medium borderline
Grai04G0014990.1 Alkaloid IO medium borderline
Grai04G0014990.2 Alkaloid IO medium borderline
Grai04G0014990.3 Alkaloid IO medium borderline
Grai04G0018710.1 Alkaloid IO low borderline
Grai05G0007950.1 Alkaloid IO medium borderline
Grai05G0007980.1 Alkaloid IO medium borderline
Grai05G0010580.1 Alkaloid IO low borderline
Grai05G0010580.2 Alkaloid IO low borderline
Grai06G0014070.2 Alkaloid IO medium borderline
Grai07G0011130.1 Alkaloid IO medium borderline
Grai07G0037140.1 Alkaloid IO medium borderline
Grai08G0002590.1 Alkaloid IO medium pass
Grai08G0002610.1 Alkaloid IO low borderline
Grai08G0004410.1 Alkaloid IO low borderline
Grai08G0006570.2 Alkaloid IO low borderline
Grai08G0028420.1 Alkaloid IO medium borderline
Grai08G0028430.1 Alkaloid IO medium borderline
Grai08G0028450.1 Alkaloid IO medium borderline
Grai09G0004400.1 Alkaloid IO medium borderline
Grai09G0007170.1 Alkaloid IO medium borderline
Grai09G0007170.2 Alkaloid IO high pass
Grai09G0011390.1 Alkaloid IO medium pass
Grai09G0019630.1 Alkaloid IO medium borderline
Grai09G0020650.1 Alkaloid IO medium borderline
Grai09G0027470.1 Alkaloid IO low borderline
Grai09G0040900.1 Alkaloid IO medium borderline
Grai10G0001420.1 Alkaloid IO medium pass
Grai10G0001480.1 Alkaloid IO medium borderline
Grai10G0001510.1 Alkaloid IO medium pass
Grai10G0013070.1 Alkaloid IO medium borderline
Grai10G0017500.1 Alkaloid IO medium borderline
Grai11G0025410.1 Alkaloid IO medium borderline
Grai11G0027290.1 Alkaloid IO medium borderline
Grai11G0027300.1 Alkaloid IO medium borderline
Grai11G0027310.1 Alkaloid IO medium borderline
Grai13G0013500.2 Alkaloid IO low borderline
Grai13G0014150.1 Alkaloid IO medium borderline