Gossypium raimondii (gossypium_raimondii)
Imported from atlas release summary for Gossypium raimondii.
3434
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
3434
Candidate Genes
BAHD
6.94%
C4H
5.04%
C3'H/CYP98A
4.92%
4CL
4.74%
POD
4.3%
F3H
3.64%
IFS
3.28%
NMT
3.22%
Other Families
63.92%
More Families (98)
T3O
253
3.12%
CYP76
229
2.83%
UGT
202
2.49%
UFGT
194
2.39%
7DLGT
191
2.36%
STR
186
2.3%
CAD
175
2.16%
CAS
155
1.91%
CODM/T6ODM
152
1.88%
SMT1/SMT2/SMT3
152
1.88%
DWF4/CYP90B1
149
1.84%
H6H
119
1.47%
TRI/TRII
118
1.46%
F3'H/CYP75B
117
1.44%
CYP71
114
1.41%
BR6OX2/CYP85A2
102
1.26%
IFR
101
1.25%
CSE
100
1.23%
RAS
92
1.14%
GS
90
1.11%
TPS
90
1.11%
GES
87
1.07%
LAC
84
1.04%
CYP90D1
84
1.04%
ANR
75
0.93%
COMT
73
0.9%
HCT
69
0.85%
CCR
68
0.84%
8HGO
60
0.74%
NCS
59
0.73%
16OMT
53
0.65%
DFR
53
0.65%
T16H
51
0.63%
SGD
50
0.62%
PYKS
50
0.62%
IO
47
0.58%
COR
47
0.58%
FNS
47
0.58%
PMT
46
0.57%
ROT3/CYP90C1
44
0.54%
7DLH
43
0.53%
BBE
42
0.52%
G8O/G8H
38
0.47%
F3'5'H/CYP75A
38
0.47%
TAT
37
0.46%
BR6OX1/CYP85A1
36
0.44%
SQE
36
0.44%
SLS
35
0.43%
CNMT
34
0.42%
MVD
33
0.41%
CPR
32
0.39%
F5H/CYP84A
29
0.36%
MPO
28
0.35%
CYP51G1
28
0.35%
CPD/CYP90A1
28
0.35%
GGPPS
26
0.32%
PAL
24
0.3%
SQS/FDFT1
23
0.28%
CCoAOMT
22
0.27%
MCT/IspD
22
0.27%
ANS/LDOX
21
0.26%
AACT
18
0.22%
DXS
17
0.21%
SMO1/SMO2
16
0.2%
CHS
15
0.19%
MVK
14
0.17%
FPPS
14
0.17%
LAMT
13
0.16%
HPPR
12
0.15%
DXR
12
0.15%
HMGR
12
0.15%
CYP80B1
10
0.12%
DET2
10
0.12%
TDC
9
0.11%
CHI
9
0.11%
DWF5
9
0.11%
TYDC_DDC
8
0.1%
ISY
8
0.1%
PMK
8
0.1%
DWF7
7
0.09%
MDS/IspF
7
0.09%
CYP80F1
6
0.07%
HYD1
6
0.07%
CYP719
5
0.06%
ADC
5
0.06%
XMT_MXMT_DXMT
5
0.06%
FLS
5
0.06%
CMK/IspE
5
0.06%
HDR/IspH
5
0.06%
6OMT_4OMT_SOMT
4
0.05%
DWF1
4
0.05%
HMGS
4
0.05%
CPI1
3
0.04%
FK
3
0.04%
ODC
2
0.02%
HDS/IspG
2
0.02%
IDI
2
0.02%
GPPS
2
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 968 | 21 | BAHD (459) | View species results |
| Phenylpropanoid pathway | 784 | 11 | POD (333) | View species results |
| Alkaloid pathway | 770 | 23 | NMT (140) | View species results |
| Flavonoid pathway | 341 | 12 | UFGT (176) | View species results |
| Steroid pathway | 315 | 13 | CAS (138) | View species results |
| Rosmarinic acid pathway | 256 | 7 | C4H (73) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2559 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 723 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Grai01G0000310.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Grai01G0005720.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Grai01G0005740.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Grai01G0006560.1 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| Grai01G0006560.2 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Grai01G0006570.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Grai01G0006830.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Grai01G0006830.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Grai01G0006830.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Grai01G0006830.4 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Grai01G0006830.5 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Grai01G0006830.6 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Grai01G0006830.7 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Grai01G0011570.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Grai01G0011570.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Grai01G0011600.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Grai01G0012690.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Grai01G0012690.2 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Grai01G0014710.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Grai01G0014720.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Grai01G0024900.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Grai02G0005780.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Grai02G0006160.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Grai02G0006250.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Grai02G0006390.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Grai02G0007360.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Grai02G0014640.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Grai02G0014640.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Grai02G0014640.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Grai02G0014640.4 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Grai02G0015390.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Grai02G0015390.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Grai02G0015390.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Grai02G0016230.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Grai02G0018070.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Grai02G0018070.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Grai02G0022800.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Grai02G0022800.2 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Grai02G0022800.3 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Grai02G0023350.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Grai02G0023350.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Grai02G0023350.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Grai02G0023350.4 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Grai02G0023350.5 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Grai02G0025260.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Grai03G0000340.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Grai03G0000350.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Grai03G0006210.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Grai03G0006480.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Grai03G0006480.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |