PlantSME Plant secondary metabolism enzyme database

Gossypium raimondii (gossypium_raimondii)

Imported from atlas release summary for Gossypium raimondii.

3434
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.19% Phenylpropanoid pathway 22.83% Alkaloid pathway 22.42% Flavonoid pathway 9.93% Steroid pathway 9.17% Rosmarinic acid pathway 7.45%
Family Distribution
BAHD 6.94% C4H 5.04% C3'H/CYP98A 4.92% 4CL 4.74% POD 4.3% F3H 3.64% IFS 3.28% NMT 3.22%
Other Families 63.92%
More Families (98)
T3O 253 3.12% CYP76 229 2.83% UGT 202 2.49% UFGT 194 2.39% 7DLGT 191 2.36% STR 186 2.3% CAD 175 2.16% CAS 155 1.91% CODM/T6ODM 152 1.88% SMT1/SMT2/SMT3 152 1.88% DWF4/CYP90B1 149 1.84% H6H 119 1.47% TRI/TRII 118 1.46% F3'H/CYP75B 117 1.44% CYP71 114 1.41% BR6OX2/CYP85A2 102 1.26% IFR 101 1.25% CSE 100 1.23% RAS 92 1.14% GS 90 1.11% TPS 90 1.11% GES 87 1.07% LAC 84 1.04% CYP90D1 84 1.04% ANR 75 0.93% COMT 73 0.9% HCT 69 0.85% CCR 68 0.84% 8HGO 60 0.74% NCS 59 0.73% 16OMT 53 0.65% DFR 53 0.65% T16H 51 0.63% SGD 50 0.62% PYKS 50 0.62% IO 47 0.58% COR 47 0.58% FNS 47 0.58% PMT 46 0.57% ROT3/CYP90C1 44 0.54% 7DLH 43 0.53% BBE 42 0.52% G8O/G8H 38 0.47% F3'5'H/CYP75A 38 0.47% TAT 37 0.46% BR6OX1/CYP85A1 36 0.44% SQE 36 0.44% SLS 35 0.43% CNMT 34 0.42% MVD 33 0.41% CPR 32 0.39% F5H/CYP84A 29 0.36% MPO 28 0.35% CYP51G1 28 0.35% CPD/CYP90A1 28 0.35% GGPPS 26 0.32% PAL 24 0.3% SQS/FDFT1 23 0.28% CCoAOMT 22 0.27% MCT/IspD 22 0.27% ANS/LDOX 21 0.26% AACT 18 0.22% DXS 17 0.21% SMO1/SMO2 16 0.2% CHS 15 0.19% MVK 14 0.17% FPPS 14 0.17% LAMT 13 0.16% HPPR 12 0.15% DXR 12 0.15% HMGR 12 0.15% CYP80B1 10 0.12% DET2 10 0.12% TDC 9 0.11% CHI 9 0.11% DWF5 9 0.11% TYDC_DDC 8 0.1% ISY 8 0.1% PMK 8 0.1% DWF7 7 0.09% MDS/IspF 7 0.09% CYP80F1 6 0.07% HYD1 6 0.07% CYP719 5 0.06% ADC 5 0.06% XMT_MXMT_DXMT 5 0.06% FLS 5 0.06% CMK/IspE 5 0.06% HDR/IspH 5 0.06% 6OMT_4OMT_SOMT 4 0.05% DWF1 4 0.05% HMGS 4 0.05% CPI1 3 0.04% FK 3 0.04% ODC 2 0.02% HDS/IspG 2 0.02% IDI 2 0.02% GPPS 2 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 968 21 BAHD (459) View species results
Phenylpropanoid pathway 784 11 POD (333) View species results
Alkaloid pathway 770 23 NMT (140) View species results
Flavonoid pathway 341 12 UFGT (176) View species results
Steroid pathway 315 13 CAS (138) View species results
Rosmarinic acid pathway 256 7 C4H (73) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2559 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 723 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TYDC_DDC
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Gene Pathway Family Confidence Status Best Target
Grai01G0008070.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
Grai01G0018250.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
Grai01G0018250.3 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
Grai02G0001690.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00003__sp_P17770_TDC_CATRO
Grai11G0021100.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
Grai11G0021120.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
Grai13G0019010.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
Grai13G0019070.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO