Gossypium raimondii (gossypium_raimondii)
Imported from atlas release summary for Gossypium raimondii.
4361
Candidate Protein Records
3434
Pathway-Level Records
8102
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
8102
Family-Level Calls
BAHD
6.94%
C4H
5.04%
C3'H/CYP98A
4.92%
4CL
4.74%
POD
4.3%
F3H
3.64%
IFS
3.28%
NMT
3.22%
Other Families
63.92%
More Families (98)
T3O
253
3.12%
CYP76
229
2.83%
UGT
202
2.49%
UFGT
194
2.39%
7DLGT
191
2.36%
STR
186
2.3%
CAD
175
2.16%
CAS
155
1.91%
CODM/T6ODM
152
1.88%
SMT1/SMT2/SMT3
152
1.88%
DWF4/CYP90B1
149
1.84%
H6H
119
1.47%
TRI/TRII
118
1.46%
F3'H/CYP75B
117
1.44%
CYP71
114
1.41%
BR6OX2/CYP85A2
102
1.26%
IFR
101
1.25%
CSE
100
1.23%
RAS
92
1.14%
GS
90
1.11%
TPS
90
1.11%
GES
87
1.07%
LAC
84
1.04%
CYP90D1
84
1.04%
ANR
75
0.93%
COMT
73
0.9%
HCT
69
0.85%
CCR
68
0.84%
8HGO
60
0.74%
NCS
59
0.73%
16OMT
53
0.65%
DFR
53
0.65%
T16H
51
0.63%
SGD
50
0.62%
PYKS
50
0.62%
IO
47
0.58%
COR
47
0.58%
FNS
47
0.58%
PMT
46
0.57%
ROT3/CYP90C1
44
0.54%
7DLH
43
0.53%
BBE
42
0.52%
G8O/G8H
38
0.47%
F3'5'H/CYP75A
38
0.47%
TAT
37
0.46%
BR6OX1/CYP85A1
36
0.44%
SQE
36
0.44%
SLS
35
0.43%
CNMT
34
0.42%
MVD
33
0.41%
CPR
32
0.39%
F5H/CYP84A
29
0.36%
MPO
28
0.35%
CYP51G1
28
0.35%
CPD/CYP90A1
28
0.35%
GGPPS
26
0.32%
PAL
24
0.3%
SQS/FDFT1
23
0.28%
CCoAOMT
22
0.27%
MCT/IspD
22
0.27%
ANS/LDOX
21
0.26%
AACT
18
0.22%
DXS
17
0.21%
SMO1/SMO2
16
0.2%
CHS
15
0.19%
MVK
14
0.17%
FPPS
14
0.17%
LAMT
13
0.16%
HPPR
12
0.15%
DXR
12
0.15%
HMGR
12
0.15%
CYP80B1
10
0.12%
DET2
10
0.12%
TDC
9
0.11%
CHI
9
0.11%
DWF5
9
0.11%
TYDC_DDC
8
0.1%
ISY
8
0.1%
PMK
8
0.1%
DWF7
7
0.09%
MDS/IspF
7
0.09%
CYP80F1
6
0.07%
HYD1
6
0.07%
CYP719
5
0.06%
ADC
5
0.06%
XMT_MXMT_DXMT
5
0.06%
FLS
5
0.06%
CMK/IspE
5
0.06%
HDR/IspH
5
0.06%
6OMT_4OMT_SOMT
4
0.05%
DWF1
4
0.05%
HMGS
4
0.05%
CPI1
3
0.04%
FK
3
0.04%
ODC
2
0.02%
HDS/IspG
2
0.02%
IDI
2
0.02%
GPPS
2
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 968 | 21 | BAHD (459) | View species results |
| Phenylpropanoid pathway | 784 | 11 | POD (333) | View species results |
| Alkaloid pathway | 770 | 23 | NMT (140) | View species results |
| Flavonoid pathway | 341 | 12 | UFGT (176) | View species results |
| Steroid pathway | 315 | 13 | CAS (138) | View species results |
| Rosmarinic acid pathway | 256 | 7 | C4H (73) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2559 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 723 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Grai13G0026250.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| Grai13G0026260.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| Grai01G0008070.1 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00002__sp_O82415_TYDC_PAPSO |
| Grai01G0018250.1 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH |
| Grai01G0018250.3 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH |
| Grai02G0001690.1 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00003__sp_P17770_TDC_CATRO |
| Grai11G0021100.1 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00002__sp_O82415_TYDC_PAPSO |
| Grai11G0021120.1 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00002__sp_O82415_TYDC_PAPSO |
| Grai13G0019010.1 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00002__sp_O82415_TYDC_PAPSO |
| Grai13G0019070.1 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00002__sp_O82415_TYDC_PAPSO |
| Grai06G0003340.1 | Alkaloid | XMT_MXMT_DXMT | medium | borderline | XMT_MXMT_DXMT__00003__sp_A0A0S2PMA8_TCS1D_CAMTA |
| Grai06G0003350.1 | Alkaloid | XMT_MXMT_DXMT | medium | borderline | XMT_MXMT_DXMT__00003__sp_A0A0S2PMA8_TCS1D_CAMTA |
| Grai11G0020830.1 | Alkaloid | XMT_MXMT_DXMT | medium | borderline | XMT_MXMT_DXMT__00009__sp_Q9AVK0_XMT1_COFAR |
| Grai11G0020850.1 | Alkaloid | XMT_MXMT_DXMT | medium | pass | XMT_MXMT_DXMT__00005__sp_A4GE69_XMT1_COFCA |
| Grai11G0020870.1 | Alkaloid | XMT_MXMT_DXMT | medium | borderline | XMT_MXMT_DXMT__00005__sp_A4GE69_XMT1_COFCA |
| Grai01G0006070.1 | Flavonoid | 4CL | medium | pass | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| Grai01G0006070.2 | Flavonoid | 4CL | medium | pass | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| Grai01G0006070.3 | Flavonoid | 4CL | medium | pass | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| Grai01G0009870.1 | Flavonoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Grai01G0009870.2 | Flavonoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Grai01G0014520.1 | Flavonoid | 4CL | low | borderline | 4CL__00015__sp_Q9LU36_4CL4_ARATH |
| Grai01G0014520.10 | Flavonoid | 4CL | low | borderline | 4CL__00010__sp_Q6ETN3_4CL3_ORYSJ |
| Grai01G0014520.2 | Flavonoid | 4CL | low | borderline | 4CL__00015__sp_Q9LU36_4CL4_ARATH |
| Grai01G0014520.3 | Flavonoid | 4CL | low | borderline | 4CL__00015__sp_Q9LU36_4CL4_ARATH |
| Grai01G0014520.4 | Flavonoid | 4CL | low | borderline | 4CL__00015__sp_Q9LU36_4CL4_ARATH |
| Grai01G0014520.5 | Flavonoid | 4CL | low | borderline | 4CL__00015__sp_Q9LU36_4CL4_ARATH |
| Grai01G0014520.6 | Flavonoid | 4CL | low | borderline | 4CL__00015__sp_Q9LU36_4CL4_ARATH |
| Grai01G0014520.7 | Flavonoid | 4CL | low | borderline | 4CL__00015__sp_Q9LU36_4CL4_ARATH |
| Grai01G0014520.8 | Flavonoid | 4CL | low | borderline | 4CL__00015__sp_Q9LU36_4CL4_ARATH |
| Grai01G0014520.9 | Flavonoid | 4CL | low | borderline | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| Grai02G0002380.1 | Flavonoid | 4CL | low | borderline | 4CL__00010__sp_Q6ETN3_4CL3_ORYSJ |
| Grai02G0002390.1 | Flavonoid | 4CL | low | borderline | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| Grai02G0011950.1 | Flavonoid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| Grai02G0019120.1 | Flavonoid | 4CL | medium | pass | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| Grai02G0021420.1 | Flavonoid | 4CL | low | borderline | 4CL__00002__sp_I3PB37_4CL1_PETHY |
| Grai02G0021420.2 | Flavonoid | 4CL | low | borderline | 4CL__00004__sp_O24146_4CL2_TOBAC |
| Grai02G0021420.3 | Flavonoid | 4CL | low | borderline | 4CL__00002__sp_I3PB37_4CL1_PETHY |
| Grai02G0021420.4 | Flavonoid | 4CL | low | borderline | 4CL__00002__sp_I3PB37_4CL1_PETHY |
| Grai03G0000330.1 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Grai03G0000370.1 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Grai03G0005210.1 | Flavonoid | 4CL | medium | pass | 4CL__00018__sp_Q9S777_4CL3_ARATH |
| Grai03G0005210.2 | Flavonoid | 4CL | medium | pass | 4CL__00018__sp_Q9S777_4CL3_ARATH |
| Grai03G0005210.3 | Flavonoid | 4CL | medium | pass | 4CL__00018__sp_Q9S777_4CL3_ARATH |
| Grai03G0005210.4 | Flavonoid | 4CL | medium | pass | 4CL__00018__sp_Q9S777_4CL3_ARATH |
| Grai03G0005210.5 | Flavonoid | 4CL | medium | pass | 4CL__00018__sp_Q9S777_4CL3_ARATH |
| Grai03G0005210.6 | Flavonoid | 4CL | medium | pass | 4CL__00018__sp_Q9S777_4CL3_ARATH |
| Grai03G0008050.1 | Flavonoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Grai03G0008050.2 | Flavonoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Grai03G0008050.3 | Flavonoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Grai03G0014490.1 | Flavonoid | 4CL | medium | pass | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |