PlantSME Plant secondary metabolism enzyme database

Litchi chinensis (litchi_chinensis)

Imported from atlas release summary for Litchi chinensis.

1897
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.15% Alkaloid pathway 23.19% Phenylpropanoid pathway 17.71% Flavonoid pathway 16.24% Steroid pathway 7.49% Rosmarinic acid pathway 6.22%
Family Distribution
UGT 6.17% C4H 5.57% 7DLGT 5.48% UFGT 5.23% BAHD 4.92% C3'H/CYP98A 4.9% CYP76 3.6% 4CL 3.42%
Other Families 60.7%
More Families (97)
IFS 150 3.35% POD 141 3.15% T3O 111 2.48% NMT 106 2.37% F3H 91 2.04% DWF4/CYP90B1 89 1.99% CAS 87 1.95% CAD 85 1.9% BR6OX2/CYP85A2 83 1.86% F3'H/CYP75B 78 1.74% TPS 75 1.68% GES 63 1.41% CODM/T6ODM 61 1.36% STR 60 1.34% SMT1/SMT2/SMT3 55 1.23% LAC 53 1.19% CYP71 50 1.12% G8O/G8H 47 1.05% TRI/TRII 46 1.03% BBE 46 1.03% F3'5'H/CYP75A 45 1.01% CSE 45 1.01% H6H 44 0.98% SGD 40 0.89% COMT 40 0.89% IFR 39 0.87% IO 38 0.85% GS 37 0.83% F5H/CYP84A 36 0.81% CYP90D1 35 0.78% PYKS 34 0.76% T16H 33 0.74% ANR 32 0.72% 7DLH 29 0.65% SLS 29 0.65% FNS 27 0.6% COR 24 0.54% BR6OX1/CYP85A1 23 0.51% NCS 22 0.49% CCR 22 0.49% HCT 22 0.49% 8HGO 21 0.47% RAS 21 0.47% 16OMT 20 0.45% TAT 20 0.45% CPD/CYP90A1 20 0.45% PMT 19 0.42% CHS 16 0.36% DFR 16 0.36% ANS/LDOX 14 0.31% DWF7 14 0.31% LAMT 13 0.29% SQE 13 0.29% CYP51G1 13 0.29% PAL 12 0.27% CYP719 11 0.25% FPPS 11 0.25% CNMT 10 0.22% MPO 9 0.2% HPPR 9 0.2% SQS/FDFT1 9 0.2% ROT3/CYP90C1 9 0.2% SMO1/SMO2 9 0.2% DXR 9 0.2% ISY 8 0.18% TYDC_DDC 8 0.18% CYP80B1 8 0.18% CCoAOMT 8 0.18% GGPPS 8 0.18% MVK 8 0.18% XMT_MXMT_DXMT 7 0.16% AACT 7 0.16% CHI 6 0.13% DET2 6 0.13% CPR 5 0.11% HMGR 5 0.11% DXS 5 0.11% FLS 3 0.07% MCT/IspD 3 0.07% HMGS 3 0.07% MVD 3 0.07% ODC 2 0.04% 6OMT_4OMT_SOMT 2 0.04% DWF1 2 0.04% CPI1 2 0.04% DWF5 2 0.04% CMK/IspE 2 0.04% ADC 1 0.02% TDC 1 0.02% CYP80F1 1 0.02% FK 1 0.02% HYD1 1 0.02% HDR/IspH 1 0.02% IDI 1 0.02% PMK 1 0.02% MDS/IspF 1 0.02% HDS/IspG 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 553 19 UGT (236) View species results
Alkaloid pathway 440 23 7DLGT (124) View species results
Phenylpropanoid pathway 336 11 POD (118) View species results
Flavonoid pathway 308 13 UFGT (212) View species results
Steroid pathway 142 11 CAS (67) View species results
Rosmarinic acid pathway 118 7 C4H (52) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1567 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 263 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
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Gene Pathway Family Confidence Status Best Target
litchi_chinensis_LITCHI028411.m1 Alkaloid NMT medium pass NMT__00041__sp_Q8GWT4_ANM15_ARATH
litchi_chinensis_LITCHI028590.m1 Alkaloid NMT low borderline NMT__00045__sp_Q8VYX1_PEAM1_WHEAT
litchi_chinensis_LITCHI029287.m1 Alkaloid NMT low borderline NMT__00028__sp_Q2LAE1_ASHH2_ARATH
litchi_chinensis_LITCHI030931.m1 Alkaloid NMT medium pass NMT__00061__sp_Q9SAH5_PLMT_ARATH
litchi_chinensis_LITCHI031539.m1 Alkaloid NMT medium pass NMT__00041__sp_Q8GWT4_ANM15_ARATH
litchi_chinensis_LITCHI031739.m1 Alkaloid NMT medium borderline NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB