Litchi chinensis (litchi_chinensis)
Imported from atlas release summary for Litchi chinensis.
1897
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1897
Candidate Genes
UGT
6.17%
C4H
5.57%
7DLGT
5.48%
UFGT
5.23%
BAHD
4.92%
C3'H/CYP98A
4.9%
CYP76
3.6%
4CL
3.42%
Other Families
60.7%
More Families (97)
IFS
150
3.35%
POD
141
3.15%
T3O
111
2.48%
NMT
106
2.37%
F3H
91
2.04%
DWF4/CYP90B1
89
1.99%
CAS
87
1.95%
CAD
85
1.9%
BR6OX2/CYP85A2
83
1.86%
F3'H/CYP75B
78
1.74%
TPS
75
1.68%
GES
63
1.41%
CODM/T6ODM
61
1.36%
STR
60
1.34%
SMT1/SMT2/SMT3
55
1.23%
LAC
53
1.19%
CYP71
50
1.12%
G8O/G8H
47
1.05%
TRI/TRII
46
1.03%
BBE
46
1.03%
F3'5'H/CYP75A
45
1.01%
CSE
45
1.01%
H6H
44
0.98%
SGD
40
0.89%
COMT
40
0.89%
IFR
39
0.87%
IO
38
0.85%
GS
37
0.83%
F5H/CYP84A
36
0.81%
CYP90D1
35
0.78%
PYKS
34
0.76%
T16H
33
0.74%
ANR
32
0.72%
7DLH
29
0.65%
SLS
29
0.65%
FNS
27
0.6%
COR
24
0.54%
BR6OX1/CYP85A1
23
0.51%
NCS
22
0.49%
CCR
22
0.49%
HCT
22
0.49%
8HGO
21
0.47%
RAS
21
0.47%
16OMT
20
0.45%
TAT
20
0.45%
CPD/CYP90A1
20
0.45%
PMT
19
0.42%
CHS
16
0.36%
DFR
16
0.36%
ANS/LDOX
14
0.31%
DWF7
14
0.31%
LAMT
13
0.29%
SQE
13
0.29%
CYP51G1
13
0.29%
PAL
12
0.27%
CYP719
11
0.25%
FPPS
11
0.25%
CNMT
10
0.22%
MPO
9
0.2%
HPPR
9
0.2%
SQS/FDFT1
9
0.2%
ROT3/CYP90C1
9
0.2%
SMO1/SMO2
9
0.2%
DXR
9
0.2%
ISY
8
0.18%
TYDC_DDC
8
0.18%
CYP80B1
8
0.18%
CCoAOMT
8
0.18%
GGPPS
8
0.18%
MVK
8
0.18%
XMT_MXMT_DXMT
7
0.16%
AACT
7
0.16%
CHI
6
0.13%
DET2
6
0.13%
CPR
5
0.11%
HMGR
5
0.11%
DXS
5
0.11%
FLS
3
0.07%
MCT/IspD
3
0.07%
HMGS
3
0.07%
MVD
3
0.07%
ODC
2
0.04%
6OMT_4OMT_SOMT
2
0.04%
DWF1
2
0.04%
CPI1
2
0.04%
DWF5
2
0.04%
CMK/IspE
2
0.04%
ADC
1
0.02%
TDC
1
0.02%
CYP80F1
1
0.02%
FK
1
0.02%
HYD1
1
0.02%
HDR/IspH
1
0.02%
IDI
1
0.02%
PMK
1
0.02%
MDS/IspF
1
0.02%
HDS/IspG
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 553 | 19 | UGT (236) | View species results |
| Alkaloid pathway | 440 | 23 | 7DLGT (124) | View species results |
| Phenylpropanoid pathway | 336 | 11 | POD (118) | View species results |
| Flavonoid pathway | 308 | 13 | UFGT (212) | View species results |
| Steroid pathway | 142 | 11 | CAS (67) | View species results |
| Rosmarinic acid pathway | 118 | 7 | C4H (52) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1567 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 263 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: SGD
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| litchi_chinensis_LITCHI000392.m1 | Alkaloid | SGD | medium | pass |
| litchi_chinensis_LITCHI000394.m1 | Alkaloid | SGD | medium | pass |
| litchi_chinensis_LITCHI000395.m1 | Alkaloid | SGD | medium | pass |
| litchi_chinensis_LITCHI002621.m1 | Alkaloid | SGD | medium | pass |
| litchi_chinensis_LITCHI004342.m1 | Alkaloid | SGD | medium | pass |
| litchi_chinensis_LITCHI004343.m1 | Alkaloid | SGD | medium | pass |
| litchi_chinensis_LITCHI004347.m1 | Alkaloid | SGD | medium | pass |
| litchi_chinensis_LITCHI004349.m1 | Alkaloid | SGD | low | borderline |
| litchi_chinensis_LITCHI005288.m1 | Alkaloid | SGD | medium | pass |
| litchi_chinensis_LITCHI005291.m1 | Alkaloid | SGD | medium | pass |
| litchi_chinensis_LITCHI005293.m1 | Alkaloid | SGD | low | borderline |
| litchi_chinensis_LITCHI005482.m1 | Alkaloid | SGD | low | borderline |
| litchi_chinensis_LITCHI007303.m1 | Alkaloid | SGD | low | borderline |
| litchi_chinensis_LITCHI007304.m1 | Alkaloid | SGD | medium | pass |
| litchi_chinensis_LITCHI008293.m1 | Alkaloid | SGD | low | borderline |
| litchi_chinensis_LITCHI008294.m1 | Alkaloid | SGD | medium | pass |
| litchi_chinensis_LITCHI008313.m1 | Alkaloid | SGD | medium | pass |
| litchi_chinensis_LITCHI008574.m1 | Alkaloid | SGD | medium | pass |
| litchi_chinensis_LITCHI013203.m1 | Alkaloid | SGD | medium | pass |
| litchi_chinensis_LITCHI013204.m1 | Alkaloid | SGD | medium | pass |
| litchi_chinensis_LITCHI013329.m1 | Alkaloid | SGD | medium | pass |
| litchi_chinensis_LITCHI013330.m1 | Alkaloid | SGD | medium | pass |
| litchi_chinensis_LITCHI014293.m1 | Alkaloid | SGD | low | borderline |
| litchi_chinensis_LITCHI015527.m1 | Alkaloid | SGD | medium | pass |
| litchi_chinensis_LITCHI016468.m1 | Alkaloid | SGD | low | borderline |
| litchi_chinensis_LITCHI017262.m1 | Alkaloid | SGD | medium | pass |
| litchi_chinensis_LITCHI023108.m1 | Alkaloid | SGD | medium | pass |
| litchi_chinensis_LITCHI024091.m1 | Alkaloid | SGD | medium | pass |
| litchi_chinensis_LITCHI024092.m1 | Alkaloid | SGD | medium | pass |
| litchi_chinensis_LITCHI026442.m1 | Alkaloid | SGD | medium | pass |
| litchi_chinensis_LITCHI029549.m1 | Alkaloid | SGD | medium | pass |
| litchi_chinensis_LITCHI029552.m1 | Alkaloid | SGD | medium | pass |
| litchi_chinensis_LITCHI029553.m1 | Alkaloid | SGD | medium | pass |
| litchi_chinensis_LITCHI029555.m1 | Alkaloid | SGD | low | borderline |
| litchi_chinensis_LITCHI029556.m1 | Alkaloid | SGD | medium | pass |
| litchi_chinensis_LITCHI029557.m1 | Alkaloid | SGD | medium | pass |
| litchi_chinensis_LITCHI029936.m1 | Alkaloid | SGD | low | borderline |
| litchi_chinensis_LITCHI029940.m1 | Alkaloid | SGD | low | borderline |
| litchi_chinensis_LITCHI031618.m1 | Alkaloid | SGD | medium | pass |
| litchi_chinensis_LITCHI031619.m1 | Alkaloid | SGD | medium | pass |