Litchi chinensis (litchi_chinensis)
Imported from atlas release summary for Litchi chinensis.
2184
Candidate Protein Records
1897
Pathway-Level Records
4471
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
4471
Family-Level Calls
UGT
6.17%
C4H
5.57%
7DLGT
5.48%
UFGT
5.23%
BAHD
4.92%
C3'H/CYP98A
4.9%
CYP76
3.6%
4CL
3.42%
Other Families
60.7%
More Families (97)
IFS
150
3.35%
POD
141
3.15%
T3O
111
2.48%
NMT
106
2.37%
F3H
91
2.04%
DWF4/CYP90B1
89
1.99%
CAS
87
1.95%
CAD
85
1.9%
BR6OX2/CYP85A2
83
1.86%
F3'H/CYP75B
78
1.74%
TPS
75
1.68%
GES
63
1.41%
CODM/T6ODM
61
1.36%
STR
60
1.34%
SMT1/SMT2/SMT3
55
1.23%
LAC
53
1.19%
CYP71
50
1.12%
G8O/G8H
47
1.05%
TRI/TRII
46
1.03%
BBE
46
1.03%
F3'5'H/CYP75A
45
1.01%
CSE
45
1.01%
H6H
44
0.98%
SGD
40
0.89%
COMT
40
0.89%
IFR
39
0.87%
IO
38
0.85%
GS
37
0.83%
F5H/CYP84A
36
0.81%
CYP90D1
35
0.78%
PYKS
34
0.76%
T16H
33
0.74%
ANR
32
0.72%
7DLH
29
0.65%
SLS
29
0.65%
FNS
27
0.6%
COR
24
0.54%
BR6OX1/CYP85A1
23
0.51%
NCS
22
0.49%
CCR
22
0.49%
HCT
22
0.49%
8HGO
21
0.47%
RAS
21
0.47%
16OMT
20
0.45%
TAT
20
0.45%
CPD/CYP90A1
20
0.45%
PMT
19
0.42%
CHS
16
0.36%
DFR
16
0.36%
ANS/LDOX
14
0.31%
DWF7
14
0.31%
LAMT
13
0.29%
SQE
13
0.29%
CYP51G1
13
0.29%
PAL
12
0.27%
CYP719
11
0.25%
FPPS
11
0.25%
CNMT
10
0.22%
MPO
9
0.2%
HPPR
9
0.2%
SQS/FDFT1
9
0.2%
ROT3/CYP90C1
9
0.2%
SMO1/SMO2
9
0.2%
DXR
9
0.2%
ISY
8
0.18%
TYDC_DDC
8
0.18%
CYP80B1
8
0.18%
CCoAOMT
8
0.18%
GGPPS
8
0.18%
MVK
8
0.18%
XMT_MXMT_DXMT
7
0.16%
AACT
7
0.16%
CHI
6
0.13%
DET2
6
0.13%
CPR
5
0.11%
HMGR
5
0.11%
DXS
5
0.11%
FLS
3
0.07%
MCT/IspD
3
0.07%
HMGS
3
0.07%
MVD
3
0.07%
ODC
2
0.04%
6OMT_4OMT_SOMT
2
0.04%
DWF1
2
0.04%
CPI1
2
0.04%
DWF5
2
0.04%
CMK/IspE
2
0.04%
ADC
1
0.02%
TDC
1
0.02%
CYP80F1
1
0.02%
FK
1
0.02%
HYD1
1
0.02%
HDR/IspH
1
0.02%
IDI
1
0.02%
PMK
1
0.02%
MDS/IspF
1
0.02%
HDS/IspG
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 553 | 19 | UGT (236) | View species results |
| Alkaloid pathway | 440 | 23 | 7DLGT (124) | View species results |
| Phenylpropanoid pathway | 336 | 11 | POD (118) | View species results |
| Flavonoid pathway | 308 | 13 | UFGT (212) | View species results |
| Steroid pathway | 142 | 11 | CAS (67) | View species results |
| Rosmarinic acid pathway | 118 | 7 | C4H (52) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1567 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 263 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| litchi_chinensis_LITCHI021838.m1 | Alkaloid | IO | medium | borderline |
| litchi_chinensis_LITCHI021840.m1 | Alkaloid | IO | medium | borderline |
| litchi_chinensis_LITCHI022849.m1 | Alkaloid | IO | medium | borderline |
| litchi_chinensis_LITCHI022964.m1 | Alkaloid | IO | medium | borderline |
| litchi_chinensis_LITCHI023735.m1 | Alkaloid | IO | medium | borderline |
| litchi_chinensis_LITCHI025637.m1 | Alkaloid | IO | low | borderline |
| litchi_chinensis_LITCHI029571.m1 | Alkaloid | IO | low | borderline |
| litchi_chinensis_LITCHI031066.m1 | Alkaloid | IO | low | borderline |
| litchi_chinensis_LITCHI001482.m1 | Alkaloid | ISY | medium | pass |
| litchi_chinensis_LITCHI010856.m1 | Alkaloid | ISY | medium | pass |
| litchi_chinensis_LITCHI010858.m1 | Alkaloid | ISY | low | borderline |
| litchi_chinensis_LITCHI010859.m1 | Alkaloid | ISY | medium | pass |
| litchi_chinensis_LITCHI010860.m1 | Alkaloid | ISY | medium | pass |
| litchi_chinensis_LITCHI014401.m1 | Alkaloid | ISY | medium | pass |
| litchi_chinensis_LITCHI025125.m1 | Alkaloid | ISY | medium | pass |
| litchi_chinensis_LITCHI025128.m1 | Alkaloid | ISY | medium | pass |
| litchi_chinensis_LITCHI005874.m1 | Alkaloid | LAMT | medium | borderline |
| litchi_chinensis_LITCHI005875.m1 | Alkaloid | LAMT | low | borderline |
| litchi_chinensis_LITCHI006433.m1 | Alkaloid | LAMT | medium | borderline |
| litchi_chinensis_LITCHI006583.m1 | Alkaloid | LAMT | medium | borderline |
| litchi_chinensis_LITCHI006584.m1 | Alkaloid | LAMT | medium | borderline |
| litchi_chinensis_LITCHI008338.m1 | Alkaloid | LAMT | medium | borderline |
| litchi_chinensis_LITCHI010255.m1 | Alkaloid | LAMT | medium | borderline |
| litchi_chinensis_LITCHI012582.m1 | Alkaloid | LAMT | low | borderline |
| litchi_chinensis_LITCHI024330.m1 | Alkaloid | LAMT | medium | borderline |
| litchi_chinensis_LITCHI024334.m1 | Alkaloid | LAMT | medium | borderline |
| litchi_chinensis_LITCHI026380.m1 | Alkaloid | LAMT | medium | borderline |
| litchi_chinensis_LITCHI026977.m1 | Alkaloid | LAMT | low | borderline |
| litchi_chinensis_LITCHI031763.m1 | Alkaloid | LAMT | medium | borderline |
| litchi_chinensis_LITCHI004875.m1 | Alkaloid | MPO | medium | pass |
| litchi_chinensis_LITCHI004876.m1 | Alkaloid | MPO | high | pass |
| litchi_chinensis_LITCHI014772.m1 | Alkaloid | MPO | medium | pass |
| litchi_chinensis_LITCHI014775.m1 | Alkaloid | MPO | medium | pass |
| litchi_chinensis_LITCHI014780.m1 | Alkaloid | MPO | medium | pass |
| litchi_chinensis_LITCHI014781.m1 | Alkaloid | MPO | high | pass |
| litchi_chinensis_LITCHI022471.m1 | Alkaloid | MPO | medium | pass |
| litchi_chinensis_LITCHI022850.m1 | Alkaloid | MPO | medium | pass |
| litchi_chinensis_LITCHI022851.m1 | Alkaloid | MPO | low | borderline |
| litchi_chinensis_LITCHI001703.m1 | Alkaloid | NCS | medium | borderline |
| litchi_chinensis_LITCHI003077.m1 | Alkaloid | NCS | low | borderline |
| litchi_chinensis_LITCHI003079.m1 | Alkaloid | NCS | medium | pass |
| litchi_chinensis_LITCHI003096.m1 | Alkaloid | NCS | medium | pass |
| litchi_chinensis_LITCHI003106.m1 | Alkaloid | NCS | medium | pass |
| litchi_chinensis_LITCHI003109.m1 | Alkaloid | NCS | medium | pass |
| litchi_chinensis_LITCHI003110.m1 | Alkaloid | NCS | medium | pass |
| litchi_chinensis_LITCHI003112.m1 | Alkaloid | NCS | medium | pass |
| litchi_chinensis_LITCHI005854.m1 | Alkaloid | NCS | medium | borderline |
| litchi_chinensis_LITCHI005856.m1 | Alkaloid | NCS | medium | borderline |
| litchi_chinensis_LITCHI007417.m1 | Alkaloid | NCS | medium | borderline |
| litchi_chinensis_LITCHI008629.m1 | Alkaloid | NCS | low | borderline |