Panax ginseng (panax_ginseng)
Imported from atlas release summary for Panax ginseng.
2784
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2784
Candidate Genes
BAHD
6.14%
C4H
6.02%
C3'H/CYP98A
5.34%
UGT
4.56%
POD
4.03%
4CL
3.87%
7DLGT
3.62%
IFS
3.61%
Other Families
62.81%
More Families (96)
UFGT
242
3.49%
CYP76
225
3.25%
T3O
194
2.8%
NMT
190
2.74%
F3H
190
2.74%
BBE
142
2.05%
DWF4/CYP90B1
142
2.05%
F3'H/CYP75B
129
1.86%
STR
127
1.83%
BR6OX2/CYP85A2
107
1.54%
CODM/T6ODM
106
1.53%
CAS
99
1.43%
CYP71
98
1.41%
CAD
94
1.36%
CYP90D1
90
1.3%
H6H
83
1.2%
CSE
80
1.16%
SMT1/SMT2/SMT3
78
1.13%
HCT
75
1.08%
LAC
64
0.92%
TRI/TRII
63
0.91%
PYKS
63
0.91%
PAL
63
0.91%
TPS
63
0.91%
T16H
60
0.87%
GES
58
0.84%
IFR
57
0.82%
RAS
56
0.81%
7DLH
55
0.79%
GS
54
0.78%
IO
51
0.74%
TAT
50
0.72%
G8O/G8H
49
0.71%
COMT
46
0.66%
F5H/CYP84A
46
0.66%
SLS
43
0.62%
FNS
42
0.61%
F3'5'H/CYP75A
40
0.58%
CCR
39
0.56%
NCS
37
0.53%
PMT
36
0.52%
CPR
34
0.49%
SGD
31
0.45%
ANR
30
0.43%
ROT3/CYP90C1
30
0.43%
CYP51G1
29
0.42%
8HGO
27
0.39%
COR
26
0.38%
CPD/CYP90A1
26
0.38%
HMGR
25
0.36%
16OMT
24
0.35%
DFR
24
0.35%
LAMT
22
0.32%
BR6OX1/CYP85A1
22
0.32%
SQE
22
0.32%
GGPPS
21
0.3%
MPO
20
0.29%
CYP719
18
0.26%
HPPR
18
0.26%
CYP80B1
17
0.25%
DXS
16
0.23%
FPPS
16
0.23%
CHS
15
0.22%
PMK
15
0.22%
ANS/LDOX
14
0.2%
SQS/FDFT1
13
0.19%
AACT
13
0.19%
CNMT
12
0.17%
TDC
11
0.16%
TYDC_DDC
9
0.13%
ISY
8
0.12%
CCoAOMT
8
0.12%
SMO1/SMO2
7
0.1%
DET2
7
0.1%
MVD
7
0.1%
MVK
7
0.1%
HMGS
7
0.1%
ADC
6
0.09%
XMT_MXMT_DXMT
6
0.09%
CHI
6
0.09%
HDR/IspH
6
0.09%
FLS
5
0.07%
HYD1
5
0.07%
MCT/IspD
5
0.07%
HDS/IspG
5
0.07%
DWF1
4
0.06%
DXR
4
0.06%
MDS/IspF
4
0.06%
IDI
4
0.06%
CMK/IspE
3
0.04%
ODC
2
0.03%
CPI1
2
0.03%
DWF5
2
0.03%
FK
2
0.03%
6OMT_4OMT_SOMT
1
0.01%
DWF7
1
0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 874 | 20 | BAHD (314) | View species results |
| Alkaloid pathway | 578 | 21 | 7DLGT (117) | View species results |
| Phenylpropanoid pathway | 553 | 13 | POD (226) | View species results |
| Flavonoid pathway | 343 | 12 | UFGT (219) | View species results |
| Rosmarinic acid pathway | 254 | 7 | C4H (95) | View species results |
| Steroid pathway | 182 | 12 | CAS (87) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 2508 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 556 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Pg_S0002.17 | Alkaloid | NMT | low | borderline | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| Pg_S0057.14 | Alkaloid | NMT | low | borderline | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| Pg_S0059.16 | Alkaloid | NMT | low | borderline | NMT__00049__sp_Q93YF5_SUVH1_TOBAC |
| Pg_S0061.29 | Alkaloid | NMT | medium | pass | NMT__00068__sp_Q9XI84_RBCMT_ARATH |
| Pg_S0064.11 | Alkaloid | NMT | low | borderline | NMT__00065__sp_Q9SEH7_PMT2_TOBAC |
| Pg_S0076.2 | Alkaloid | NMT | medium | pass | NMT__00020__sp_O23372_ATXR3_ARATH |
| Pg_S0089.4 | Alkaloid | NMT | low | borderline | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| Pg_S0093.104 | Alkaloid | NMT | medium | pass | NMT__00021__sp_O64827_SUVR5_ARATH |
| Pg_S0136.11 | Alkaloid | NMT | low | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| Pg_S0141.8 | Alkaloid | NMT | low | borderline | NMT__00020__sp_O23372_ATXR3_ARATH |
| Pg_S0164.7 | Alkaloid | NMT | medium | borderline | NMT__00060__sp_Q9MAT5_ANM10_ARATH |
| Pg_S0172.1 | Alkaloid | NMT | medium | pass | NMT__00024__sp_P0CB22_ATX2_ARATH |
| Pg_S0173.4 | Alkaloid | NMT | low | borderline | NMT__00032__sp_Q5PP37_ATXR2_ARATH |
| Pg_S0178.16 | Alkaloid | NMT | medium | pass | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| Pg_S0204.36 | Alkaloid | NMT | low | borderline | NMT__00024__sp_P0CB22_ATX2_ARATH |
| Pg_S0219.53 | Alkaloid | NMT | medium | pass | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| Pg_S0244.28 | Alkaloid | NMT | medium | pass | NMT__00025__sp_P93831_CLF_ARATH |
| Pg_S0274.11 | Alkaloid | NMT | medium | pass | NMT__00025__sp_P93831_CLF_ARATH |
| Pg_S0280.47 | Alkaloid | NMT | medium | pass | NMT__00021__sp_O64827_SUVR5_ARATH |
| Pg_S0292.26 | Alkaloid | NMT | medium | pass | NMT__00049__sp_Q93YF5_SUVH1_TOBAC |
| Pg_S0295.3 | Alkaloid | NMT | medium | pass | NMT__00020__sp_O23372_ATXR3_ARATH |
| Pg_S0297.16 | Alkaloid | NMT | medium | pass | NMT__00049__sp_Q93YF5_SUVH1_TOBAC |
| Pg_S0312.4 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Pg_S0326.12 | Alkaloid | NMT | medium | pass | NMT__00060__sp_Q9MAT5_ANM10_ARATH |
| Pg_S0358.3 | Alkaloid | NMT | medium | pass | NMT__00025__sp_P93831_CLF_ARATH |
| Pg_S0358.4 | Alkaloid | NMT | medium | pass | NMT__00025__sp_P93831_CLF_ARATH |
| Pg_S0358.5 | Alkaloid | NMT | medium | pass | NMT__00025__sp_P93831_CLF_ARATH |
| Pg_S0374.14 | Alkaloid | NMT | low | borderline | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| Pg_S0374.15 | Alkaloid | NMT | medium | pass | NMT__00060__sp_Q9MAT5_ANM10_ARATH |
| Pg_S0375.2 | Alkaloid | NMT | medium | pass | NMT__00041__sp_Q8GWT4_ANM15_ARATH |
| Pg_S0380.5 | Alkaloid | NMT | medium | borderline | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| Pg_S0402.36 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| Pg_S0402.53 | Alkaloid | NMT | medium | pass | NMT__00049__sp_Q93YF5_SUVH1_TOBAC |
| Pg_S0408.34 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| Pg_S0431.43 | Alkaloid | NMT | medium | pass | NMT__00049__sp_Q93YF5_SUVH1_TOBAC |
| Pg_S0431.69 | Alkaloid | NMT | low | borderline | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| Pg_S0450.16 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Pg_S0533.1 | Alkaloid | NMT | low | borderline | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| Pg_S0534.61 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| Pg_S0536.32 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Pg_S0536.8 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Pg_S0540.1 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Pg_S0540.2 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Pg_S0575.42 | Alkaloid | NMT | medium | pass | NMT__00055__sp_Q9FNC7_SUVR2_ARATH |
| Pg_S0684.13 | Alkaloid | NMT | medium | pass | NMT__00017__sp_F4K1J4_ATXR7_ARATH |
| Pg_S0701.40 | Alkaloid | NMT | medium | borderline | NMT__00002__sp_A0A075D6M1_NNMT_RAUSE |
| Pg_S0733.2 | Alkaloid | NMT | low | borderline | NMT__00060__sp_Q9MAT5_ANM10_ARATH |
| Pg_S0733.3 | Alkaloid | NMT | medium | pass | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| Pg_S0747.55 | Alkaloid | NMT | low | borderline | NMT__00047__sp_Q8VZJ1_ATXR5_ARATH |
| Pg_S0760.24 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |