Panax ginseng (panax_ginseng)
Imported from atlas release summary for Panax ginseng.
2784
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2784
Candidate Genes
BAHD
6.14%
C4H
6.02%
C3'H/CYP98A
5.34%
UGT
4.56%
POD
4.03%
4CL
3.87%
7DLGT
3.62%
IFS
3.61%
Other Families
62.81%
More Families (96)
UFGT
242
3.49%
CYP76
225
3.25%
T3O
194
2.8%
NMT
190
2.74%
F3H
190
2.74%
BBE
142
2.05%
DWF4/CYP90B1
142
2.05%
F3'H/CYP75B
129
1.86%
STR
127
1.83%
BR6OX2/CYP85A2
107
1.54%
CODM/T6ODM
106
1.53%
CAS
99
1.43%
CYP71
98
1.41%
CAD
94
1.36%
CYP90D1
90
1.3%
H6H
83
1.2%
CSE
80
1.16%
SMT1/SMT2/SMT3
78
1.13%
HCT
75
1.08%
LAC
64
0.92%
TRI/TRII
63
0.91%
PYKS
63
0.91%
PAL
63
0.91%
TPS
63
0.91%
T16H
60
0.87%
GES
58
0.84%
IFR
57
0.82%
RAS
56
0.81%
7DLH
55
0.79%
GS
54
0.78%
IO
51
0.74%
TAT
50
0.72%
G8O/G8H
49
0.71%
COMT
46
0.66%
F5H/CYP84A
46
0.66%
SLS
43
0.62%
FNS
42
0.61%
F3'5'H/CYP75A
40
0.58%
CCR
39
0.56%
NCS
37
0.53%
PMT
36
0.52%
CPR
34
0.49%
SGD
31
0.45%
ANR
30
0.43%
ROT3/CYP90C1
30
0.43%
CYP51G1
29
0.42%
8HGO
27
0.39%
COR
26
0.38%
CPD/CYP90A1
26
0.38%
HMGR
25
0.36%
16OMT
24
0.35%
DFR
24
0.35%
LAMT
22
0.32%
BR6OX1/CYP85A1
22
0.32%
SQE
22
0.32%
GGPPS
21
0.3%
MPO
20
0.29%
CYP719
18
0.26%
HPPR
18
0.26%
CYP80B1
17
0.25%
DXS
16
0.23%
FPPS
16
0.23%
CHS
15
0.22%
PMK
15
0.22%
ANS/LDOX
14
0.2%
SQS/FDFT1
13
0.19%
AACT
13
0.19%
CNMT
12
0.17%
TDC
11
0.16%
TYDC_DDC
9
0.13%
ISY
8
0.12%
CCoAOMT
8
0.12%
SMO1/SMO2
7
0.1%
DET2
7
0.1%
MVD
7
0.1%
MVK
7
0.1%
HMGS
7
0.1%
ADC
6
0.09%
XMT_MXMT_DXMT
6
0.09%
CHI
6
0.09%
HDR/IspH
6
0.09%
FLS
5
0.07%
HYD1
5
0.07%
MCT/IspD
5
0.07%
HDS/IspG
5
0.07%
DWF1
4
0.06%
DXR
4
0.06%
MDS/IspF
4
0.06%
IDI
4
0.06%
CMK/IspE
3
0.04%
ODC
2
0.03%
CPI1
2
0.03%
DWF5
2
0.03%
FK
2
0.03%
6OMT_4OMT_SOMT
1
0.01%
DWF7
1
0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 874 | 20 | BAHD (314) | View species results |
| Alkaloid pathway | 578 | 21 | 7DLGT (117) | View species results |
| Phenylpropanoid pathway | 553 | 13 | POD (226) | View species results |
| Flavonoid pathway | 343 | 12 | UFGT (219) | View species results |
| Rosmarinic acid pathway | 254 | 7 | C4H (95) | View species results |
| Steroid pathway | 182 | 12 | CAS (87) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 2508 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 556 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Pg_S0765.27 | Alkaloid | NMT | medium | pass | NMT__00047__sp_Q8VZJ1_ATXR5_ARATH |
| Pg_S0780.1 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Pg_S0780.2 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Pg_S0810.73 | Alkaloid | NMT | medium | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| Pg_S0817.19 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Pg_S0846.13 | Alkaloid | NMT | medium | pass | NMT__00049__sp_Q93YF5_SUVH1_TOBAC |
| Pg_S0862.3 | Alkaloid | NMT | low | borderline | NMT__00020__sp_O23372_ATXR3_ARATH |
| Pg_S0867.6 | Alkaloid | NMT | low | borderline | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| Pg_S0897.34 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Pg_S0930.14 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| Pg_S0960.17 | Alkaloid | NMT | medium | borderline | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| Pg_S0994.1 | Alkaloid | NMT | low | borderline | NMT__00027__sp_Q10MI4_EZ1_ORYSJ |
| Pg_S0995.1 | Alkaloid | NMT | medium | borderline | NMT__00050__sp_Q944H0_PEAM2_ARATH |
| Pg_S1029.32 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| Pg_S1038.4 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Pg_S1066.14 | Alkaloid | NMT | medium | pass | NMT__00055__sp_Q9FNC7_SUVR2_ARATH |
| Pg_S1100.3 | Alkaloid | NMT | low | borderline | NMT__00055__sp_Q9FNC7_SUVR2_ARATH |
| Pg_S1110.10 | Alkaloid | NMT | medium | borderline | NMT__00070__sp_W5U2K2_NMT_CATRO |
| Pg_S1110.5 | Alkaloid | NMT | medium | borderline | NMT__00070__sp_W5U2K2_NMT_CATRO |
| Pg_S1110.9 | Alkaloid | NMT | medium | borderline | NMT__00070__sp_W5U2K2_NMT_CATRO |
| Pg_S1116.8 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Pg_S1172.4 | Alkaloid | NMT | medium | pass | NMT__00049__sp_Q93YF5_SUVH1_TOBAC |
| Pg_S1185.15 | Alkaloid | NMT | medium | pass | NMT__00055__sp_Q9FNC7_SUVR2_ARATH |
| Pg_S1203.8 | Alkaloid | NMT | medium | borderline | NMT__00050__sp_Q944H0_PEAM2_ARATH |
| Pg_S1237.40 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| Pg_S1247.3 | Alkaloid | NMT | medium | pass | NMT__00020__sp_O23372_ATXR3_ARATH |
| Pg_S1266.5 | Alkaloid | NMT | medium | pass | NMT__00020__sp_O23372_ATXR3_ARATH |
| Pg_S1307.1 | Alkaloid | NMT | medium | pass | NMT__00041__sp_Q8GWT4_ANM15_ARATH |
| Pg_S1323.6 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Pg_S1336.3 | Alkaloid | NMT | medium | borderline | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| Pg_S1353.1 | Alkaloid | NMT | medium | pass | NMT__00020__sp_O23372_ATXR3_ARATH |
| Pg_S1367.10 | Alkaloid | NMT | low | borderline | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| Pg_S1384.12 | Alkaloid | NMT | medium | pass | NMT__00020__sp_O23372_ATXR3_ARATH |
| Pg_S1401.6 | Alkaloid | NMT | medium | borderline | NMT__00050__sp_Q944H0_PEAM2_ARATH |
| Pg_S1416.37 | Alkaloid | NMT | medium | pass | NMT__00049__sp_Q93YF5_SUVH1_TOBAC |
| Pg_S1480.23 | Alkaloid | NMT | low | borderline | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| Pg_S1493.2 | Alkaloid | NMT | medium | pass | NMT__00050__sp_Q944H0_PEAM2_ARATH |
| Pg_S1501.42 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Pg_S1509.1 | Alkaloid | NMT | low | borderline | NMT__00055__sp_Q9FNC7_SUVR2_ARATH |
| Pg_S1587.5 | Alkaloid | NMT | low | borderline | NMT__00060__sp_Q9MAT5_ANM10_ARATH |
| Pg_S1606.21 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Pg_S1627.5 | Alkaloid | NMT | medium | pass | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| Pg_S1635.3 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| Pg_S1642.3 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Pg_S1652.10 | Alkaloid | NMT | medium | pass | NMT__00025__sp_P93831_CLF_ARATH |
| Pg_S1741.1 | Alkaloid | NMT | medium | pass | NMT__00020__sp_O23372_ATXR3_ARATH |
| Pg_S1757.4 | Alkaloid | NMT | medium | pass | NMT__00047__sp_Q8VZJ1_ATXR5_ARATH |
| Pg_S1798.1 | Alkaloid | NMT | medium | pass | NMT__00020__sp_O23372_ATXR3_ARATH |
| Pg_S1798.8 | Alkaloid | NMT | medium | pass | NMT__00020__sp_O23372_ATXR3_ARATH |
| Pg_S1879.9 | Alkaloid | NMT | low | borderline | NMT__00023__sp_O82210_ANM12_ARATH |