PlantSME Plant secondary metabolism enzyme database

Panax ginseng (panax_ginseng)

Imported from atlas release summary for Panax ginseng.

2784
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 31.39% Alkaloid pathway 20.76% Phenylpropanoid pathway 19.86% Flavonoid pathway 12.32% Rosmarinic acid pathway 9.12% Steroid pathway 6.54%
Family Distribution
BAHD 6.14% C4H 6.02% C3'H/CYP98A 5.34% UGT 4.56% POD 4.03% 4CL 3.87% 7DLGT 3.62% IFS 3.61%
Other Families 62.81%
More Families (96)
UFGT 242 3.49% CYP76 225 3.25% T3O 194 2.8% NMT 190 2.74% F3H 190 2.74% BBE 142 2.05% DWF4/CYP90B1 142 2.05% F3'H/CYP75B 129 1.86% STR 127 1.83% BR6OX2/CYP85A2 107 1.54% CODM/T6ODM 106 1.53% CAS 99 1.43% CYP71 98 1.41% CAD 94 1.36% CYP90D1 90 1.3% H6H 83 1.2% CSE 80 1.16% SMT1/SMT2/SMT3 78 1.13% HCT 75 1.08% LAC 64 0.92% TRI/TRII 63 0.91% PYKS 63 0.91% PAL 63 0.91% TPS 63 0.91% T16H 60 0.87% GES 58 0.84% IFR 57 0.82% RAS 56 0.81% 7DLH 55 0.79% GS 54 0.78% IO 51 0.74% TAT 50 0.72% G8O/G8H 49 0.71% COMT 46 0.66% F5H/CYP84A 46 0.66% SLS 43 0.62% FNS 42 0.61% F3'5'H/CYP75A 40 0.58% CCR 39 0.56% NCS 37 0.53% PMT 36 0.52% CPR 34 0.49% SGD 31 0.45% ANR 30 0.43% ROT3/CYP90C1 30 0.43% CYP51G1 29 0.42% 8HGO 27 0.39% COR 26 0.38% CPD/CYP90A1 26 0.38% HMGR 25 0.36% 16OMT 24 0.35% DFR 24 0.35% LAMT 22 0.32% BR6OX1/CYP85A1 22 0.32% SQE 22 0.32% GGPPS 21 0.3% MPO 20 0.29% CYP719 18 0.26% HPPR 18 0.26% CYP80B1 17 0.25% DXS 16 0.23% FPPS 16 0.23% CHS 15 0.22% PMK 15 0.22% ANS/LDOX 14 0.2% SQS/FDFT1 13 0.19% AACT 13 0.19% CNMT 12 0.17% TDC 11 0.16% TYDC_DDC 9 0.13% ISY 8 0.12% CCoAOMT 8 0.12% SMO1/SMO2 7 0.1% DET2 7 0.1% MVD 7 0.1% MVK 7 0.1% HMGS 7 0.1% ADC 6 0.09% XMT_MXMT_DXMT 6 0.09% CHI 6 0.09% HDR/IspH 6 0.09% FLS 5 0.07% HYD1 5 0.07% MCT/IspD 5 0.07% HDS/IspG 5 0.07% DWF1 4 0.06% DXR 4 0.06% MDS/IspF 4 0.06% IDI 4 0.06% CMK/IspE 3 0.04% ODC 2 0.03% CPI1 2 0.03% DWF5 2 0.03% FK 2 0.03% 6OMT_4OMT_SOMT 1 0.01% DWF7 1 0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 874 20 BAHD (314) View species results
Alkaloid pathway 578 21 7DLGT (117) View species results
Phenylpropanoid pathway 553 13 POD (226) View species results
Flavonoid pathway 343 12 UFGT (219) View species results
Rosmarinic acid pathway 254 7 C4H (95) View species results
Steroid pathway 182 12 CAS (87) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 2508 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 556 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TRI/TRII
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Gene Pathway Family Confidence Status Best Target
Pg_S4579.9 Alkaloid TRI/TRII low borderline TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH
Pg_S4627.4 Alkaloid TRI/TRII medium pass TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB
Pg_S4911.3 Alkaloid TRI/TRII medium pass TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH
Pg_S4911.4 Alkaloid TRI/TRII medium pass TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH
Pg_S5309.7 Alkaloid TRI/TRII medium pass TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB
Pg_S5529.13 Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
Pg_S6025.6 Alkaloid TRI/TRII medium pass TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH
Pg_S6070.2 Alkaloid TRI/TRII medium pass TRI_TRII__00005__sp_P50162_TRN1_DATST
Pg_S6187.1 Alkaloid TRI/TRII low borderline TRI_TRII__00005__sp_P50162_TRN1_DATST
Pg_S8338.1 Alkaloid TRI/TRII medium pass TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB
Pg_S8338.2 Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
Pg_S8338.4 Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
Pg_S8652.2 Alkaloid TRI/TRII medium pass TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB