PlantSME Plant secondary metabolism enzyme database

Panax ginseng (panax_ginseng)

Imported from atlas release summary for Panax ginseng.

3514
Candidate Protein Records
2784
Pathway-Level Records
6926
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 31.39% Alkaloid pathway 20.76% Phenylpropanoid pathway 19.86% Flavonoid pathway 12.32% Rosmarinic acid pathway 9.12% Steroid pathway 6.54%
Family Distribution
BAHD 6.14% C4H 6.02% C3'H/CYP98A 5.34% UGT 4.56% POD 4.03% 4CL 3.87% 7DLGT 3.62% IFS 3.61%
Other Families 62.81%
More Families (96)
UFGT 242 3.49% CYP76 225 3.25% T3O 194 2.8% NMT 190 2.74% F3H 190 2.74% BBE 142 2.05% DWF4/CYP90B1 142 2.05% F3'H/CYP75B 129 1.86% STR 127 1.83% BR6OX2/CYP85A2 107 1.54% CODM/T6ODM 106 1.53% CAS 99 1.43% CYP71 98 1.41% CAD 94 1.36% CYP90D1 90 1.3% H6H 83 1.2% CSE 80 1.16% SMT1/SMT2/SMT3 78 1.13% HCT 75 1.08% LAC 64 0.92% TRI/TRII 63 0.91% PYKS 63 0.91% PAL 63 0.91% TPS 63 0.91% T16H 60 0.87% GES 58 0.84% IFR 57 0.82% RAS 56 0.81% 7DLH 55 0.79% GS 54 0.78% IO 51 0.74% TAT 50 0.72% G8O/G8H 49 0.71% COMT 46 0.66% F5H/CYP84A 46 0.66% SLS 43 0.62% FNS 42 0.61% F3'5'H/CYP75A 40 0.58% CCR 39 0.56% NCS 37 0.53% PMT 36 0.52% CPR 34 0.49% SGD 31 0.45% ANR 30 0.43% ROT3/CYP90C1 30 0.43% CYP51G1 29 0.42% 8HGO 27 0.39% COR 26 0.38% CPD/CYP90A1 26 0.38% HMGR 25 0.36% 16OMT 24 0.35% DFR 24 0.35% LAMT 22 0.32% BR6OX1/CYP85A1 22 0.32% SQE 22 0.32% GGPPS 21 0.3% MPO 20 0.29% CYP719 18 0.26% HPPR 18 0.26% CYP80B1 17 0.25% DXS 16 0.23% FPPS 16 0.23% CHS 15 0.22% PMK 15 0.22% ANS/LDOX 14 0.2% SQS/FDFT1 13 0.19% AACT 13 0.19% CNMT 12 0.17% TDC 11 0.16% TYDC_DDC 9 0.13% ISY 8 0.12% CCoAOMT 8 0.12% SMO1/SMO2 7 0.1% DET2 7 0.1% MVD 7 0.1% MVK 7 0.1% HMGS 7 0.1% ADC 6 0.09% XMT_MXMT_DXMT 6 0.09% CHI 6 0.09% HDR/IspH 6 0.09% FLS 5 0.07% HYD1 5 0.07% MCT/IspD 5 0.07% HDS/IspG 5 0.07% DWF1 4 0.06% DXR 4 0.06% MDS/IspF 4 0.06% IDI 4 0.06% CMK/IspE 3 0.04% ODC 2 0.03% CPI1 2 0.03% DWF5 2 0.03% FK 2 0.03% 6OMT_4OMT_SOMT 1 0.01% DWF7 1 0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 874 20 BAHD (314) View species results
Alkaloid pathway 578 21 7DLGT (117) View species results
Phenylpropanoid pathway 553 13 POD (226) View species results
Flavonoid pathway 343 12 UFGT (219) View species results
Rosmarinic acid pathway 254 7 C4H (95) View species results
Steroid pathway 182 12 CAS (87) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 2508 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 556 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: UGT
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Protein/Isoform Record Pathway Family Confidence Status Best Target
Pg_S6708.4 Terpenoid UGT medium pass UGT__00064__sp_P0DO71_GT941_SIRGR
Pg_S6708.5 Terpenoid UGT medium pass UGT__00063__sp_P0DO67_GT943_SIRGR
Pg_S6715.1 Terpenoid UGT medium pass UGT__00021__sp_A7MAS5_75L17_MALDO
Pg_S6715.2 Terpenoid UGT medium pass UGT__00021__sp_A7MAS5_75L17_MALDO
Pg_S6788.2 Terpenoid UGT medium pass UGT__00033__sp_F8WKW8_UGT9_GARJA
Pg_S7030.4 Terpenoid UGT medium pass UGT__00022__sp_B2XBQ5_85A19_PRUDU
Pg_S7152.6 Terpenoid UGT medium pass UGT__00024__sp_B3VI56_U91D2_STERE
Pg_S7225.1 Terpenoid UGT medium pass UGT__00063__sp_P0DO67_GT943_SIRGR
Pg_S7260.1 Terpenoid UGT medium pass UGT__00010__sp_A0A0K0PVM5_UGT11_PANGI
Pg_S7638.1 Terpenoid UGT medium pass UGT__00078__sp_Q8W491_U73B3_ARATH
Pg_S8137.3 Terpenoid UGT medium pass UGT__00018__sp_A0A224AM54_708G1_CITJP
Pg_S8150.2 Terpenoid UGT medium pass UGT__00033__sp_F8WKW8_UGT9_GARJA
Pg_S8654.2 Terpenoid UGT medium pass UGT__00103__sp_Q9M156_U72B1_ARATH
Pg_S8654.4 Terpenoid UGT medium pass UGT__00078__sp_Q8W491_U73B3_ARATH
Pg_S8923.1 Terpenoid UGT medium pass UGT__00021__sp_A7MAS5_75L17_MALDO
Pg_S8923.2 Terpenoid UGT medium pass UGT__00021__sp_A7MAS5_75L17_MALDO