Polytrichum commune (polytrichum_commune)
Imported from atlas release summary for Polytrichum commune.
890
Candidate Protein Records
606
Pathway-Level Records
1772
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
1772
Family-Level Calls
C4H
7.62%
C3'H/CYP98A
6.43%
CYP76
5.42%
4CL
5.25%
BAHD
4.97%
POD
4.01%
NMT
3.33%
IFS
3.1%
Other Families
59.88%
More Families (93)
F3H
49
2.77%
DWF4/CYP90B1
49
2.77%
T3O
46
2.6%
STR
41
2.31%
BR6OX2/CYP85A2
39
2.2%
F3'H/CYP75B
37
2.09%
GS
35
1.98%
UGT
32
1.81%
IFR
31
1.75%
7DLGT
30
1.69%
UFGT
30
1.69%
PYKS
29
1.64%
CODM/T6ODM
28
1.58%
H6H
23
1.3%
SGD
21
1.19%
IO
21
1.19%
PAL
21
1.19%
LAC
21
1.19%
T16H
19
1.07%
F3'5'H/CYP75A
19
1.07%
COMT
19
1.07%
SMT1/SMT2/SMT3
19
1.07%
CHS
18
1.02%
CAD
18
1.02%
CYP71
18
1.02%
G8O/G8H
17
0.96%
FNS
17
0.96%
TRI/TRII
16
0.9%
BR6OX1/CYP85A1
16
0.9%
7DLH
13
0.73%
RAS
11
0.62%
SLS
10
0.56%
CSE
10
0.56%
CYP90D1
10
0.56%
CNMT
9
0.51%
16OMT
9
0.51%
ANR
9
0.51%
HCT
9
0.51%
CPD/CYP90A1
9
0.51%
CYP80B1
8
0.45%
NCS
8
0.45%
CPR
8
0.45%
CAS
8
0.45%
CYP719
7
0.4%
BBE
7
0.4%
F5H/CYP84A
7
0.4%
PMT
6
0.34%
MPO
6
0.34%
TAT
6
0.34%
AACT
6
0.34%
COR
5
0.28%
DFR
5
0.28%
GGPPS
5
0.28%
8HGO
4
0.23%
CHI
4
0.23%
ANS/LDOX
4
0.23%
CCR
4
0.23%
SQS/FDFT1
4
0.23%
DWF1
4
0.23%
DXS
4
0.23%
ADC
3
0.17%
SMO1/SMO2
3
0.17%
CYP51G1
3
0.17%
DWF5
3
0.17%
ROT3/CYP90C1
3
0.17%
CMK/IspE
3
0.17%
FPPS
3
0.17%
TDC
2
0.11%
ODC
2
0.11%
ISY
2
0.11%
LAMT
2
0.11%
TYDC_DDC
2
0.11%
CYP80F1
2
0.11%
FLS
2
0.11%
CCoAOMT
2
0.11%
DET2
2
0.11%
SQE
2
0.11%
HMGS
2
0.11%
HDR/IspH
2
0.11%
HMGR
2
0.11%
MVK
2
0.11%
MCT/IspD
2
0.11%
MVD
2
0.11%
HPPR
1
0.06%
DWF7
1
0.06%
FK
1
0.06%
HYD1
1
0.06%
CPI1
1
0.06%
PMK
1
0.06%
MDS/IspF
1
0.06%
DXR
1
0.06%
HDS/IspG
1
0.06%
IDI
1
0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 153 | 11 | POD (64) | View species results |
| Terpenoid pathway | 151 | 18 | BAHD (58) | View species results |
| Alkaloid pathway | 128 | 16 | NMT (20) | View species results |
| Flavonoid pathway | 75 | 8 | UFGT (29) | View species results |
| Rosmarinic acid pathway | 66 | 7 | C4H (33) | View species results |
| Steroid pathway | 33 | 12 | CAS (8) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 753 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 108 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
| Protein/Isoform Record | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| POcom1020005270 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| POcom1020005280 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| POcom1020006420 | Alkaloid | NMT | low | borderline | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| POcom1020006440 | Alkaloid | NMT | low | borderline | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| POcom1030007210 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| POcom1050010700 | Alkaloid | NMT | medium | pass | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| POcom1050012600 | Alkaloid | NMT | medium | borderline | NMT__00050__sp_Q944H0_PEAM2_ARATH |
| POcom1480021430 | Alkaloid | NMT | medium | pass | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| POcom1870032600 | Alkaloid | NMT | low | borderline | NMT__00024__sp_P0CB22_ATX2_ARATH |
| POcom1870032730 | Alkaloid | NMT | low | borderline | NMT__00049__sp_Q93YF5_SUVH1_TOBAC |
| POcom1870032740 | Alkaloid | NMT | low | borderline | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| POcom1950035870 | Alkaloid | NMT | low | borderline | NMT__00024__sp_P0CB22_ATX2_ARATH |
| POcom2190046000 | Alkaloid | NMT | medium | pass | NMT__00060__sp_Q9MAT5_ANM10_ARATH |
| POcom2190046340 | Alkaloid | NMT | medium | pass | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| POcom2240047980 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| POcom2250048500 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| POcom2370057240 | Alkaloid | NMT | medium | borderline | NMT__00011__sp_A9X7L0_ANMT_RUTGR |
| POcom2370057260 | Alkaloid | NMT | medium | borderline | NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI |
| POcom2370057290 | Alkaloid | NMT | medium | borderline | NMT__00011__sp_A9X7L0_ANMT_RUTGR |
| POcom2390059670 | Alkaloid | NMT | low | borderline | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| POcom2430062420 | Alkaloid | NMT | low | borderline | NMT__00024__sp_P0CB22_ATX2_ARATH |
| POcom2470065180 | Alkaloid | NMT | medium | borderline | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| POcom2500067720 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| POcom2520069940 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| POcom2540072040 | Alkaloid | NMT | low | borderline | NMT__00062__sp_Q9SCP7_NAMT1_ARATH |
| POcom2540072090 | Alkaloid | NMT | low | borderline | NMT__00021__sp_O64827_SUVR5_ARATH |
| POcom2540072320 | Alkaloid | NMT | medium | pass | NMT__00068__sp_Q9XI84_RBCMT_ARATH |
| POcom2660087240 | Alkaloid | NMT | medium | pass | NMT__00025__sp_P93831_CLF_ARATH |
| POcom2660087550 | Alkaloid | NMT | medium | borderline | NMT__00011__sp_A9X7L0_ANMT_RUTGR |
| POcom640105260 | Alkaloid | NMT | low | borderline | NMT__00017__sp_F4K1J4_ATXR7_ARATH |
| POcom650107400 | Alkaloid | NMT | medium | pass | NMT__00041__sp_Q8GWT4_ANM15_ARATH |
| POcom660108580 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| POcom700117500 | Alkaloid | NMT | medium | pass | NMT__00040__sp_Q84WW6_ASHH1_ARATH |
| POcom700118150 | Alkaloid | NMT | medium | pass | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| POcom762610127830 | Alkaloid | NMT | low | borderline | NMT__00049__sp_Q93YF5_SUVH1_TOBAC |
| POcom806140138490 | Alkaloid | NMT | low | borderline | NMT__00017__sp_F4K1J4_ATXR7_ARATH |
| POcom808030140690 | Alkaloid | NMT | low | borderline | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| POcom811890148810 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| POcom812360150140 | Alkaloid | NMT | medium | pass | NMT__00023__sp_O82210_ANM12_ARATH |
| POcom813190155920 | Alkaloid | NMT | low | borderline | NMT__00017__sp_F4K1J4_ATXR7_ARATH |
| POcom813550159490 | Alkaloid | NMT | low | borderline | NMT__00039__sp_Q84W92_ANM13_ARATH |
| POcom813750162230 | Alkaloid | NMT | medium | pass | NMT__00061__sp_Q9SAH5_PLMT_ARATH |
| POcom813960163760 | Alkaloid | NMT | medium | pass | NMT__00027__sp_Q10MI4_EZ1_ORYSJ |
| POcom814050165610 | Alkaloid | NMT | low | borderline | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| POcom815100178510 | Alkaloid | NMT | medium | pass | NMT__00039__sp_Q84W92_ANM13_ARATH |
| POcom815420183390 | Alkaloid | NMT | medium | borderline | NMT__00008__sp_A0AA51VIL5_NMT2_LOPWI |
| POcom815740188360 | Alkaloid | NMT | medium | borderline | NMT__00002__sp_A0A075D6M1_NNMT_RAUSE |
| POcom817470216280 | Alkaloid | NMT | low | borderline | NMT__00024__sp_P0CB22_ATX2_ARATH |
| POcom817490218100 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| POcom817850225580 | Alkaloid | NMT | low | borderline | NMT__00016__sp_F4JNX3_CMKMT_ARATH |