PlantSME Plant secondary metabolism enzyme database

Polytrichum commune (polytrichum_commune)

Imported from atlas release summary for Polytrichum commune.

606
Candidate Genes
101
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 25.25% Terpenoid pathway 24.92% Alkaloid pathway 21.12% Flavonoid pathway 12.38% Rosmarinic acid pathway 10.89% Steroid pathway 5.45%
Family Distribution
C4H 7.62% C3'H/CYP98A 6.43% CYP76 5.42% 4CL 5.25% BAHD 4.97% POD 4.01% NMT 3.33% IFS 3.1%
Other Families 59.88%
More Families (93)
F3H 49 2.77% DWF4/CYP90B1 49 2.77% T3O 46 2.6% STR 41 2.31% BR6OX2/CYP85A2 39 2.2% F3'H/CYP75B 37 2.09% GS 35 1.98% UGT 32 1.81% IFR 31 1.75% 7DLGT 30 1.69% UFGT 30 1.69% PYKS 29 1.64% CODM/T6ODM 28 1.58% H6H 23 1.3% SGD 21 1.19% IO 21 1.19% PAL 21 1.19% LAC 21 1.19% T16H 19 1.07% F3'5'H/CYP75A 19 1.07% COMT 19 1.07% SMT1/SMT2/SMT3 19 1.07% CHS 18 1.02% CAD 18 1.02% CYP71 18 1.02% G8O/G8H 17 0.96% FNS 17 0.96% TRI/TRII 16 0.9% BR6OX1/CYP85A1 16 0.9% 7DLH 13 0.73% RAS 11 0.62% SLS 10 0.56% CSE 10 0.56% CYP90D1 10 0.56% CNMT 9 0.51% 16OMT 9 0.51% ANR 9 0.51% HCT 9 0.51% CPD/CYP90A1 9 0.51% CYP80B1 8 0.45% NCS 8 0.45% CPR 8 0.45% CAS 8 0.45% CYP719 7 0.4% BBE 7 0.4% F5H/CYP84A 7 0.4% PMT 6 0.34% MPO 6 0.34% TAT 6 0.34% AACT 6 0.34% COR 5 0.28% DFR 5 0.28% GGPPS 5 0.28% 8HGO 4 0.23% CHI 4 0.23% ANS/LDOX 4 0.23% CCR 4 0.23% SQS/FDFT1 4 0.23% DWF1 4 0.23% DXS 4 0.23% ADC 3 0.17% SMO1/SMO2 3 0.17% CYP51G1 3 0.17% DWF5 3 0.17% ROT3/CYP90C1 3 0.17% CMK/IspE 3 0.17% FPPS 3 0.17% TDC 2 0.11% ODC 2 0.11% ISY 2 0.11% LAMT 2 0.11% TYDC_DDC 2 0.11% CYP80F1 2 0.11% FLS 2 0.11% CCoAOMT 2 0.11% DET2 2 0.11% SQE 2 0.11% HMGS 2 0.11% HDR/IspH 2 0.11% HMGR 2 0.11% MVK 2 0.11% MCT/IspD 2 0.11% MVD 2 0.11% HPPR 1 0.06% DWF7 1 0.06% FK 1 0.06% HYD1 1 0.06% CPI1 1 0.06% PMK 1 0.06% MDS/IspF 1 0.06% DXR 1 0.06% HDS/IspG 1 0.06% IDI 1 0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 153 11 POD (64) View species results
Terpenoid pathway 151 18 BAHD (58) View species results
Alkaloid pathway 128 16 NMT (20) View species results
Flavonoid pathway 75 8 UFGT (29) View species results
Rosmarinic acid pathway 66 7 C4H (33) View species results
Steroid pathway 33 12 CAS (8) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 753 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 108 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Gene Pathway Family Confidence Status
POcom1830029580 Steroid SMO1/SMO2 medium pass
POcom1910034290 Steroid SMO1/SMO2 medium pass
POcom2660087190 Steroid SMO1/SMO2 medium pass
POcom1030007170 Steroid SMT1/SMT2/SMT3 low borderline
POcom1050012600 Steroid SMT1/SMT2/SMT3 low borderline
POcom1810028170 Steroid SMT1/SMT2/SMT3 medium pass
POcom1860031000 Steroid SMT1/SMT2/SMT3 medium pass
POcom2370056680 Steroid SMT1/SMT2/SMT3 low borderline
POcom2540071930 Steroid SMT1/SMT2/SMT3 medium pass
POcom615740102530 Steroid SMT1/SMT2/SMT3 medium pass
POcom700117280 Steroid SMT1/SMT2/SMT3 medium pass
POcom790131750 Steroid SMT1/SMT2/SMT3 low borderline
POcom814060165830 Steroid SMT1/SMT2/SMT3 medium pass
POcom814920176660 Steroid SMT1/SMT2/SMT3 low borderline
POcom815400183040 Steroid SMT1/SMT2/SMT3 low borderline
POcom815740188360 Steroid SMT1/SMT2/SMT3 low borderline
POcom817290211440 Steroid SMT1/SMT2/SMT3 low borderline
POcom818080237270 Steroid SMT1/SMT2/SMT3 low borderline
POcom846410241280 Steroid SMT1/SMT2/SMT3 low borderline
POcom880245340 Steroid SMT1/SMT2/SMT3 medium pass
POcom900247850 Steroid SMT1/SMT2/SMT3 low borderline
POcom960253910 Steroid SMT1/SMT2/SMT3 low borderline
POcom2560074550 Steroid SQE medium pass
POcom818080237280 Steroid SQE low borderline
POcom1550022350 Steroid SQS/FDFT1 medium pass
POcom2190046520 Steroid SQS/FDFT1 medium pass
POcom700118090 Steroid SQS/FDFT1 high pass
POcom817180208750 Steroid SQS/FDFT1 low borderline